Literature DB >> 21302011

G-quadruplexes-novel mediators of gene function.

Wenhua Zhou1, Nigel J Brand, Liming Ying.   

Abstract

Since the famous double-helix model was proposed, chromosomal DNA has been regarded as a rigid molecule containing the genetic information of an organism. It is clear now that DNA can adopt many transient, complex structures that can perform different biological functions. The G4 DNA (also called DNA G-quadruplex or G-tetraplex), a four-stranded DNA structure composed of stacked G-tetrads (guanine tetrads), has attracted much attention during the past two decades due to its ability to adopt a variety of structures and its possible biological functions. This review gives a glimpse on the structural diversity and biophysical properties of these fascinating DNA structures. Common methods that are widely used in investigating biophysical properties and biological functions of G4 DNA are described briefly. Next, bioinformatics studies that indicate evidence of evolutionary selection and potential functions of G4 DNA are discussed. Finally, examples of various biological functions of different G4 DNA are given, and potential roles of G4 DNA in respect of cardiovascular science are discussed.

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Year:  2011        PMID: 21302011     DOI: 10.1007/s12265-011-9258-2

Source DB:  PubMed          Journal:  J Cardiovasc Transl Res        ISSN: 1937-5387            Impact factor:   4.132


  115 in total

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Authors:  A M Zahler; J R Williamson; T R Cech; D M Prescott
Journal:  Nature       Date:  1991-04-25       Impact factor: 49.962

2.  Homodimeric MyoD preferentially binds tetraplex structures of regulatory sequences of muscle-specific genes.

Authors:  Shulamit Etzioni; Anat Yafe; Samer Khateb; Pnina Weisman-Shomer; Eyal Bengal; Michael Fry
Journal:  J Biol Chem       Date:  2005-05-27       Impact factor: 5.157

3.  Extension of G-quadruplex DNA by ciliate telomerase.

Authors:  Liana Oganesian; Ian K Moon; Tracy M Bryan; Michael B Jarstfer
Journal:  EMBO J       Date:  2006-03-02       Impact factor: 11.598

Review 4.  A hitchhiker's guide to G-quadruplex ligands.

Authors:  David Monchaud; Marie-Paule Teulade-Fichou
Journal:  Org Biomol Chem       Date:  2007-11-14       Impact factor: 3.876

5.  The human cardiac troponin I locus: assignment to chromosome 19p13.2-19q13.2.

Authors:  C MacGeoch; P J Barton; W J Vallins; P Bhavsar; N K Spurr
Journal:  Hum Genet       Date:  1991-11       Impact factor: 4.132

6.  DNA tetraplex formation in the control region of c-myc.

Authors:  T Simonsson; P Pecinka; M Kubista
Journal:  Nucleic Acids Res       Date:  1998-03-01       Impact factor: 16.971

Review 7.  The role of DNA structure in genetic regulation.

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Journal:  CRC Crit Rev Biochem       Date:  1977

8.  An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes.

Authors:  M J Behe
Journal:  Nucleic Acids Res       Date:  1995-02-25       Impact factor: 16.971

9.  Telomere length trajectory and its determinants in persons with coronary artery disease: longitudinal findings from the heart and soul study.

Authors:  Ramin Farzaneh-Far; Jue Lin; Elissa Epel; Kyle Lapham; Elizabeth Blackburn; Mary A Whooley
Journal:  PLoS One       Date:  2010-01-08       Impact factor: 3.240

10.  Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4.

Authors:  Yong Qin; Evonne M Rezler; Vijay Gokhale; Daekyu Sun; Laurence H Hurley
Journal:  Nucleic Acids Res       Date:  2007-11-05       Impact factor: 16.971

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  6 in total

1.  Comparative investigation of the genomic regions involved in antigenic variation of the TprK antigen among treponemal species, subspecies, and strains.

Authors:  Lorenzo Giacani; Stephanie L Brandt; Maritza Puray-Chavez; Tara Brinck Reid; Charmie Godornes; Barbara J Molini; Martin Benzler; Jörg S Hartig; Sheila A Lukehart; Arturo Centurion-Lara
Journal:  J Bacteriol       Date:  2012-06-01       Impact factor: 3.490

2.  A G-rich element forms a G-quadruplex and regulates BACE1 mRNA alternative splicing.

Authors:  Jean-François Fisette; Daniel R Montagna; Mihaela-Rita Mihailescu; Michael S Wolfe
Journal:  J Neurochem       Date:  2012-03-13       Impact factor: 5.372

3.  PPG peptide nucleic acids that promote DNA guanine quadruplexes.

Authors:  Ethan A Englund; Pankaj Gupta; Christopher M Micklitsch; Mykola I Onyshchenko; Evgenia Remeeva; Ronald D Neumann; Igor G Panyutin; Daniel H Appella
Journal:  Chembiochem       Date:  2014-07-08       Impact factor: 3.164

4.  Rationally designed DNA therapeutics can modulate human TH expression by controlling specific GQ formation in its promoter.

Authors:  Nathan Beals; Mohamed M Farhath; Prakash Kharel; Brintha Croos; Thulasi Mahendran; John Johnson; Soumitra Basu
Journal:  Mol Ther       Date:  2021-05-14       Impact factor: 11.454

5.  G4LDB: a database for discovering and studying G-quadruplex ligands.

Authors:  Qian Li; Jun-Feng Xiang; Qian-Fan Yang; Hong-Xia Sun; Ai-Jiao Guan; Ya-Lin Tang
Journal:  Nucleic Acids Res       Date:  2012-11-17       Impact factor: 16.971

6.  Possible regulatory roles of promoter g-quadruplexes in cardiac function-related genes - human TnIc as a model.

Authors:  Wenhua Zhou; Kogularamanan Suntharalingam; Nigel J Brand; Paul J R Barton; Ramon Vilar; Liming Ying
Journal:  PLoS One       Date:  2013-01-09       Impact factor: 3.240

  6 in total

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