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Literature DB >> 7838704

NRSub: a non-redundant data base for the Bacillus subtilis genome.

Abstract

We have organized the DNA sequences of Bacillus subtillis from the EMBL collection to build the NRSub data base. This data base is free from duplications and all detected overlapping sequences are merged into contigs. Data on gene mapping and codon usage are also included. NRSub is publically available through anonymous FTP in flat file format or structured on the form of an ACNUC data base. Under this format, it is possible to use NRSub with the retrieval program Query--win. This program integrates a graphical interface and may be installed on any kind of UNX computer under X Window and on which the Vibrant and Motif libraries are available.

Entities: Species

Mesh：

Substances：
Codon
DNA, Bacterial

Year: 1994 PMID： 7838704 PMCID： PMC310112 DOI： 10.1093/nar/22.25.5525

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

20 in total

NRSub: a non-redundant data base for the Bacillus subtilis genome.

1. Escherichia coli K12 genomic database.

Review 2. Codon preferences in free-living microorganisms.

3. The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

4. The European Bioinformatics Institute (EBI) databases.

5. The PIR-International Protein Sequence Database.

6. GenBank.

7. The SWISS-PROT protein sequence data bank: current status.

8. ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

9. Codon usage in bacteria: correlation with gene expressivity.

10. Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases.

1. NUREBASE: database of nuclear hormone receptors.

2. Use and misuse of correspondence analysis in codon usage studies.

3. A relationship between GC content and coding-sequence length.

4. The non-redundant Bacillus subtilis (NRSub) database: update 1998.

5. The EMBL Nucleotide Sequence Database.

6. The NRSub database: update 1997.

7. The European Bioinformatics Institute (EBI) databases.

8. A frameshift error detection algorithm for DNA sequencing projects.

9. NRSub: a non-redundant database for Bacillus subtilis.

10. Computational identification of rare codons of Escherichia coli based on codon pairs preference.