Literature DB >> 9016504

The NRSub database: update 1997.

G Perrière1, I Moszer, T Gojobori.   

Abstract

In the context of the international project aiming at sequencing the whole genome of Bacillus subtilis we have developed NRSub, a non-redundant database of sequences from this organism. Starting from the B.subtilis sequences available in the repository collections we have removed all encountered duplications, then we have added extra annotations to the sequences (e.g. accession numbers for the genes, locations on the genetic map, codon usage index). We have also added cross-references with EMBL/GenBank/DDBJ, MEDLINE, SWISS-PROT and ENZYME databases. NRSub is distributed through anonymous FTP as a text file in EMBL format and as an ACNUC database. It is also possible to access the database through two dedicated World Wide Web servers located in France (http://acnuc.univ-lyon1.fr/nrsub/nrsub.++ +html ) and in Japan (http://ddbjs4h.genes.nig.ac.jp/ ).

Entities:  

Mesh:

Year:  1997        PMID: 9016504      PMCID: PMC146364          DOI: 10.1093/nar/25.1.53

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  17 in total

1.  Complete physical map of the Bacillus subtilis 168 chromosome constructed by a gene-directed mutagenesis method.

Authors:  M Itaya; T Tanaka
Journal:  J Mol Biol       Date:  1991-08-05       Impact factor: 5.469

2.  On-line tools for sequence retrieval and multivariate statistics in molecular biology.

Authors:  G Perrière; J Thioulouse
Journal:  Comput Appl Biosci       Date:  1996-02

3.  Asymmetric substitution patterns in the two DNA strands of bacteria.

Authors:  J R Lobry
Journal:  Mol Biol Evol       Date:  1996-05       Impact factor: 16.240

4.  The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors:  P M Sharp; W H Li
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

5.  The PIR-International Protein Sequence Database.

Authors:  D G George; W C Barker; H W Mewes; F Pfeiffer; A Tsugita
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

6.  The ENZYME data bank in 1995.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

7.  The European Bioinformatics Institute (EBI) databases.

Authors:  P Rodriguez-Tomé; P J Stoehr; G N Cameron; T P Flores
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

8.  ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

Authors:  M Gouy; C Gautier; M Attimonelli; C Lanave; G di Paola
Journal:  Comput Appl Biosci       Date:  1985-09

9.  A proposal for a uniform nomenclature in bacterial genetics.

Authors:  M Demerec; E A Adelberg; A J Clark; P E Hartman
Journal:  Genetics       Date:  1966-07       Impact factor: 4.562

Review 10.  Sequencing and functional analysis of the genome of Bacillus subtilis strain 168.

Authors:  C R Harwood; A Wipat
Journal:  FEBS Lett       Date:  1996-06-24       Impact factor: 4.124

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