Literature DB >> 14530443

Antizyme frameshifting as a functional probe of eukaryotic translational termination.

Zemfira N Karamysheva1, Andrey L Karamyshev, Koichi Ito, Takashi Yokogawa, Kazuya Nishikawa, Yoshikazu Nakamura, Senya Matsufuji.   

Abstract

Translation termination in eukaryotes is mediated by the release factors eRF1 and eRF3, but mechanisms of the interplay between these factors are not fully understood, due partly to the difficulty of measuring termination on eukaryotic mRNAs. Here, we describe an in vitro system for the assay of termination using competition with programmed frameshifting at the recoding signal of mammalian antizyme. The efficiency of antizyme frameshifting in rabbit reticulocyte lysates was reduced by addition of recombinant rabbit eRF1 and eRF3 in a synergistic manner. Addition of suppressor tRNA to this assay system revealed competition with a third event, stop codon readthrough. Using these assays, we demonstrated that an eRF3 mutation at the GTPase domain repressed termination in a dominant negative fashion probably by binding to eRF1. The effect of the release factors and the suppressor tRNA showed that the stop codon at the antizyme frameshift site is relatively inefficient compared to either the natural termination signals at the end of protein coding sequences or the readthrough signal from a plant virus. The system affords a convenient assay for release factor activity and has provided some novel views of the mechanism of antizyme frameshifting.

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Year:  2003        PMID: 14530443      PMCID: PMC219470          DOI: 10.1093/nar/gkg789

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  49 in total

Review 1.  Regulation of cellular polyamines by antizyme.

Authors:  P Coffino
Journal:  Nat Rev Mol Cell Biol       Date:  2001-03       Impact factor: 94.444

2.  Translation termination in eukaryotes: polypeptide release factor eRF1 is composed of functionally and structurally distinct domains.

Authors:  L Y Frolova; T I Merkulova; L L Kisselev
Journal:  RNA       Date:  2000-03       Impact factor: 4.942

Review 3.  Mimicry grasps reality in translation termination.

Authors:  Y Nakamura; K Ito; M Ehrenberg
Journal:  Cell       Date:  2000-05-12       Impact factor: 41.582

4.  Terminating eukaryote translation: domain 1 of release factor eRF1 functions in stop codon recognition.

Authors:  G Bertram; H A Bell; D W Ritchie; G Fullerton; I Stansfield
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

5.  Overexpression and purification of recombinant eRF1 proteins of rabbit and Tetrahymena thermophila.

Authors:  A L Karamyshev; Z N Karamysheva; K Ito; S Matsufuji; Y Nakamura
Journal:  Biochemistry (Mosc)       Date:  1999-12       Impact factor: 2.487

6.  A tripeptide 'anticodon' deciphers stop codons in messenger RNA.

Authors:  K Ito; M Uno; Y Nakamura
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

Review 7.  Translational termination comes of age.

Authors:  L L Kisselev; R H Buckingham
Journal:  Trends Biochem Sci       Date:  2000-11       Impact factor: 13.807

8.  Conservation of polyamine regulation by translational frameshifting from yeast to mammals.

Authors:  I P Ivanov; S Matsufuji; Y Murakami; R F Gesteland; J F Atkins
Journal:  EMBO J       Date:  2000-04-17       Impact factor: 11.598

9.  Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3.

Authors:  G Zhouravleva; L Frolova; X Le Goff; R Le Guellec; S Inge-Vechtomov; L Kisselev; M Philippe
Journal:  EMBO J       Date:  1995-08-15       Impact factor: 11.598

Review 10.  Antizyme expression: a subversion of triplet decoding, which is remarkably conserved by evolution, is a sensor for an autoregulatory circuit.

Authors:  I P Ivanov; R F Gesteland; J F Atkins
Journal:  Nucleic Acids Res       Date:  2000-09-01       Impact factor: 16.971

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  3 in total

Review 1.  Roles of polyamines in translation.

Authors:  Thomas E Dever; Ivaylo P Ivanov
Journal:  J Biol Chem       Date:  2018-10-15       Impact factor: 5.157

Review 2.  Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation.

Authors:  Ivaylo P Ivanov; John F Atkins
Journal:  Nucleic Acids Res       Date:  2007-03-01       Impact factor: 16.971

Review 3.  Virus versus host cell translation love and hate stories.

Authors:  Anastassia V Komarova; Anne-Lise Haenni; Bertha Cecilia Ramírez
Journal:  Adv Virus Res       Date:  2009       Impact factor: 9.937

  3 in total

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