Literature DB >> 7720716

Water release associated with specific binding of gal repressor.

M M Garner1, D C Rau.   

Abstract

Water release coupled to the association of gal repressor with DNA is measured from the sensitivity of the binding constant to the solution osmotic pressure, using neutral solutes that are typically excluded from polar protein and DNA surfaces. Differences in water release for binding of repressor to different sequences are linked with differences in specificity and binding energies. With sucrose, the specific binding of repressor to operator sequences is accompanied by the release of 130 water molecules. No water release is seen for the weak, non-specific binding of repressor to poly(dI-dC).(dI-dC). A difference in the release of six water molecules is seen even for the binding of gal repressor to two different operator sequences that differ in affinity by only a factor of two.

Entities:  

Mesh:

Substances:

Year:  1995        PMID: 7720716      PMCID: PMC398205          DOI: 10.1002/j.1460-2075.1995.tb07109.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  29 in total

1.  Polymer inaccessible volume changes during opening and closing of a voltage-dependent ionic channel.

Authors:  J Zimmerberg; V A Parsegian
Journal:  Nature       Date:  1986 Sep 4-10       Impact factor: 49.962

2.  A nontraditional role for water in the cytochrome c oxidase reaction.

Authors:  J A Kornblatt; G H Hoa
Journal:  Biochemistry       Date:  1990-10-09       Impact factor: 3.162

3.  Crystal structure of trp repressor/operator complex at atomic resolution.

Authors:  Z Otwinowski; R W Schevitz; R G Zhang; C L Lawson; A Joachimiak; R Q Marmorstein; B F Luisi; P B Sigler
Journal:  Nature       Date:  1988-09-22       Impact factor: 49.962

4.  Purification and properties of Gal repressor:pL-galR fusion in pKC31 plasmid vector.

Authors:  A Majumdar; S Rudikoff; S Adhya
Journal:  J Biol Chem       Date:  1987-02-15       Impact factor: 5.157

5.  A thermodynamic study of the trp repressor-operator interaction.

Authors:  J E Ladbury; J G Wright; J M Sturtevant; P B Sigler
Journal:  J Mol Biol       Date:  1994-05-20       Impact factor: 5.469

6.  Demonstration of two operator elements in gal: in vitro repressor binding studies.

Authors:  A Majumdar; S Adhya
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

7.  Preferential interactions of proteins with solvent components in aqueous amino acid solutions.

Authors:  T Arakawa; S N Timasheff
Journal:  Arch Biochem Biophys       Date:  1983-07-01       Impact factor: 4.013

8.  Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites.

Authors:  M C Mossing; M T Record
Journal:  J Mol Biol       Date:  1985-11-20       Impact factor: 5.469

9.  Stabilization of protein structure by sugars.

Authors:  T Arakawa; S N Timasheff
Journal:  Biochemistry       Date:  1982-12-07       Impact factor: 3.162

10.  The stabilization of proteins by sucrose.

Authors:  J C Lee; S N Timasheff
Journal:  J Biol Chem       Date:  1981-07-25       Impact factor: 5.157

View more
  30 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  An information theory model of hydrophobic interactions.

Authors:  G Hummer; S Garde; A E García; A Pohorille; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

3.  Energetic and structural considerations for the mechanism of protein sliding along DNA in the nonspecific BamHI-DNA complex.

Authors:  Jian Sun; Hector Viadiu; Aneel K Aggarwal; Harel Weinstein
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

4.  Probing protein hydration and conformational states in solution.

Authors:  C Reid; R P Rand
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

5.  An alternative method to the osmotic stressing polymers: the osmomanometer.

Authors:  Eric Raspaud
Journal:  Eur Biophys J       Date:  2003-05-10       Impact factor: 1.733

6.  Nucleotide shuffling and ssDNA recognition in Oxytricha nova telomere end-binding protein complexes.

Authors:  Douglas L Theobald; Steve C Schultz
Journal:  EMBO J       Date:  2003-08-15       Impact factor: 11.598

7.  Solvation change and ion release during aminoacylation by aminoacyl-tRNA synthetases.

Authors:  Rajat Banerjee; Amit Kumar Mandal; Rajesh Saha; Soumi Guha; Soma Samaddar; Anusree Bhattacharyya; Siddhartha Roy
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

8.  Differences between EcoRI nonspecific and "star" sequence complexes revealed by osmotic stress.

Authors:  Nina Y Sidorova; Donald C Rau
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

9.  Interfacial water as a "hydration fingerprint" in the noncognate complex of BamHI.

Authors:  Monika Fuxreiter; Mihaly Mezei; István Simon; Roman Osman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

10.  Using single-turnover kinetics with osmotic stress to characterize the EcoRV cleavage reaction.

Authors:  Rocco Ferrandino; Nina Sidorova; Donald Rau
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.