Literature DB >> 11607700

An information theory model of hydrophobic interactions.

G Hummer1, S Garde, A E García, A Pohorille, L R Pratt.   

Abstract

A molecular model of poorly understood hydrophobic effects is heuristically developed using the methods of information theory. Because primitive hydrophobic effects can be tied to the probability of observing a molecular-sized cavity in the solvent, the probability distribution of the number of solvent centers in a cavity volume is modeled on the basis of the two moments available from the density and radial distribution of oxygen atoms in liquid water. The modeled distribution then yields the probability that no solvent centers are found in the cavity volume. This model is shown to account quantitatively for the central hydrophobic phenomena of cavity formation and association of inert gas solutes. The connection of information theory to statistical thermodynamics provides a basis for clarification of hydrophobic effects. The simplicity and flexibility of the approach suggest that it should permit applications to conformational equilibria of nonpolar solutes and hydrophobic residues in biopolymers.

Entities:  

Year:  1996        PMID: 11607700      PMCID: PMC38575          DOI: 10.1073/pnas.93.17.8951

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

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9.  Hydration and allosteric transitions in hemoglobin.

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10.  Pressure-induced molten globule state of cholinesterase.

Authors:  C Cléry; F Renault; P Masson
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  81 in total

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Authors:  N Hillson; J N Onuchic; A E García
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3.  Temperature and length scale dependence of hydrophobic effects and their possible implications for protein folding.

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

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6.  Inferring the hydrophobic interaction from the properties of neat water.

Authors:  B J Berne
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9.  Charge, hydrophobicity, and confined water: putting past simulations into a simple theoretical framework.

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Journal:  Biochem Cell Biol       Date:  2010-04       Impact factor: 3.626

10.  Water clusters in nonpolar cavities.

Authors:  Subramanian Vaitheeswaran; Hao Yin; Jayendran C Rasaiah; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-30       Impact factor: 11.205

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