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Literature DB >> 7687350

The signal recognition particle database (SRPDB).

Abstract

The SRPDB (signal recognition particle database) provides annotated SRP RNA sequences from Eucaryotes and Archaea, phylogenetically ordered and aligned with their bacterial equivalents. We also make available representative RNA secondary structure diagrams, where each base pair is proven by comparative sequence analysis. New to this release are 17 SRP RNA sequences (a total of 64 sequences) and alignments of proteins SRP19 and SRP54 with their RNA binding sites.

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Year: 1993 PMID： 7687350 PMCID： PMC309729 DOI： 10.1093/nar/21.13.3019

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

11 in total

1. Recognition of a tetranucleotide loop of signal recognition particle RNA by protein SRP19.

Authors: C Zwieb
Journal: J Biol Chem Date: 1992-08-05 Impact factor: 5.157

2. The signal recognition particle (SRP) database.

Authors: C Zwieb; N Larsen
Journal: Nucleic Acids Res Date: 1992-05-11 Impact factor: 16.971

3. Basic local alignment search tool.

Authors: S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal: J Mol Biol Date: 1990-10-05 Impact factor: 5.469

4. The EMBL Data Library.

Authors: D G Higgins; R Fuchs; P J Stoehr; G N Cameron
Journal: Nucleic Acids Res Date: 1992-05-11 Impact factor: 16.971

5. SRP-RNA sequence alignment and secondary structure.

Authors: N Larsen; C Zwieb
Journal: Nucleic Acids Res Date: 1991-01-25 Impact factor: 16.971

6. ALMA, an editor for large sequence alignments.

Authors: S Thirup; N E Larsen
Journal: Proteins Date: 1990

7. A comprehensive set of sequence analysis programs for the VAX.

Authors: J Devereux; P Haeberli; O Smithies
Journal: Nucleic Acids Res Date: 1984-01-11 Impact factor: 16.971

8. Evolutionary relationships amongst archaebacteria. A comparative study of 23 S ribosomal RNAs of a sulphur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen.

Authors: H Leffers; J Kjems; L Ostergaard; N Larsen; R A Garrett
Journal: J Mol Biol Date: 1987-05-05 Impact factor: 5.469

9. The signal recognition particle in S. cerevisiae.

Authors: B C Hann; P Walter
Journal: Cell Date: 1991-10-04 Impact factor: 41.582

10. The methionine-rich domain of the 54 kDa subunit of signal recognition particle is sufficient for the interaction with signal sequences.

Authors: H Lütcke; S High; K Römisch; A J Ashford; B Dobberstein
Journal: EMBO J Date: 1992-04 Impact factor: 11.598

7 in total

The signal recognition particle database (SRPDB).

1. Recognition of a tetranucleotide loop of signal recognition particle RNA by protein SRP19.

2. The signal recognition particle (SRP) database.

3. Basic local alignment search tool.

4. The EMBL Data Library.

5. SRP-RNA sequence alignment and secondary structure.

6. ALMA, an editor for large sequence alignments.

7. A comprehensive set of sequence analysis programs for the VAX.

8. Evolutionary relationships amongst archaebacteria. A comparative study of 23 S ribosomal RNAs of a sulphur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen.

9. The signal recognition particle in S. cerevisiae.

10. The methionine-rich domain of the 54 kDa subunit of signal recognition particle is sufficient for the interaction with signal sequences.

1. The signal recognition particle (SRP) RNA links conformational changes in the SRP to protein targeting.

2. The signal recognition particle database (SRPDB).

3. Molecular analysis of the gene family of the signal recognition particle (SRP) RNA of tomato.

4. The EMBL Nucleotide Sequence Database.

5. The European Bioinformatics Institute (EBI) databases.

6. The European Bioinformatics Institute (EBI) databases.

7. RNA sequence analysis using covariance models.