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Literature DB >> 1707519

SRP-RNA sequence alignment and secondary structure.

Abstract

The secondary structures of the RNAs from the signal recognition particle, termed SRP-RNA, were derived buy comparative analyses of an alignment of 39 sequences. The models are minimal in that only base pairs are included for which there is comparative evidence. The structures represent refinements of earlier versions and include a new short helix.

Mesh：

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Year: 1991 PMID： 1707519 PMCID： PMC333582 DOI： 10.1093/nar/19.2.209

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

42 in total

1. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

Authors: C R Woese; O Kandler; M L Wheelis
Journal: Proc Natl Acad Sci U S A Date: 1990-06 Impact factor: 11.205

2. Structure of the archaebacterial 7S RNA molecule.

Authors: B P Kaine
Journal: Mol Gen Genet Date: 1990-05

3. The secondary structure of the 7SL RNA in the signal recognition particle: functional implications.

Authors: C Zwieb
Journal: Nucleic Acids Res Date: 1985-09-11 Impact factor: 16.971

4. Removal of the Alu structural domain from signal recognition particle leaves its protein translocation activity intact.

Authors: V Siegel; P Walter
Journal: Nature Date: 1986 Mar 6-12 Impact factor: 49.962

5. Identification of dynamic sequences in the central domain of 7SL RNA.

Authors: C Zwieb; E Ullu
Journal: Nucleic Acids Res Date: 1986-06-11 Impact factor: 16.971

6. Small RNA species of the HeLa cell: metabolism and subcellular localization.

Authors: G Zieve; S Penman
Journal: Cell Date: 1976-05 Impact factor: 41.582

7. ALMA, an editor for large sequence alignments.

Authors: S Thirup; N E Larsen
Journal: Proteins Date: 1990

8. Binding sites of the 19-kDa and 68/72-kDa signal recognition particle (SRP) proteins on SRP RNA as determined in protein-RNA "footprinting".

Authors: V Siegel; P Walter
Journal: Proc Natl Acad Sci U S A Date: 1988-03 Impact factor: 11.205

9. Genes encoding the 7S RNA and tRNA(Ser) are linked to one of the two rRNA operons in the genome of the extremely thermophilic archaebacterium Methanothermus fervidus.

Authors: E S Haas; J W Brown; C J Daniels; J N Reeve
Journal: Gene Date: 1990-05-31 Impact factor: 3.688

8. Assembly of the human signal recognition particle (SRP): overlap of regions required for binding of protein SRP54 and assembly control.

Authors: J Yin; C H Yang; C Zwieb
Journal: RNA Date: 2001-10 Impact factor: 4.942

9. Interaction of rice and human SRP19 polypeptides with signal recognition particle RNA.

Authors: K Chittenden; K Gowda; S D Black; C Zwieb
Journal: Plant Mol Biol Date: 1997-06 Impact factor: 4.076

10. Saccharomyces SRP RNA secondary structures: a conserved S-domain and extended Alu-domain.

Authors: Rob W Van Nues; Jeremy D Brown
Journal: RNA Date: 2004-01 Impact factor: 4.942

SRP-RNA sequence alignment and secondary structure.

1. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

2. Structure of the archaebacterial 7S RNA molecule.

3. The secondary structure of the 7SL RNA in the signal recognition particle: functional implications.

4. Removal of the Alu structural domain from signal recognition particle leaves its protein translocation activity intact.

5. Identification of dynamic sequences in the central domain of 7SL RNA.

6. Small RNA species of the HeLa cell: metabolism and subcellular localization.

7. ALMA, an editor for large sequence alignments.

8. Binding sites of the 19-kDa and 68/72-kDa signal recognition particle (SRP) proteins on SRP RNA as determined in protein-RNA "footprinting".

9. Genes encoding the 7S RNA and tRNA(Ser) are linked to one of the two rRNA operons in the genome of the extremely thermophilic archaebacterium Methanothermus fervidus.

10. The 4.5S RNA gene from Pseudomonas aeruginosa.

1. tmRDB (tmRNA database).

2. SRPDB (signal recognition particle database).

3. SRPDB (Signal Recognition Particle Database).

4. tmRDB (tmRNA database).

5. Important role of the tetraloop region of 4.5S RNA in SRP binding to its receptor FtsY.

Review 6. Protein targeting to the bacterial cytoplasmic membrane.

Review 7. Sec-dependent protein export and the involvement of the molecular chaperone SecB.

8. Assembly of the human signal recognition particle (SRP): overlap of regions required for binding of protein SRP54 and assembly control.

9. Interaction of rice and human SRP19 polypeptides with signal recognition particle RNA.

10. Saccharomyces SRP RNA secondary structures: a conserved S-domain and extended Alu-domain.