Literature DB >> 7568009

Mathematical analysis of activation thresholds in enzyme-catalyzed positive feedbacks: application to the feedbacks of blood coagulation.

E Beltrami1, J Jesty.   

Abstract

A hierarchy of enzyme-catalyzed positive feedback loops is examined by mathematical and numerical analysis. Four systems are described, from the simplest, in which an enzyme catalyzes its own formation from an inactive precursor, to the most complex, in which two sequential feedback loops act in a cascade. In the latter we also examine the function of a long-range feedback, in which the final enzyme produced in the second loop activates the initial step in the first loop. When the enzymes generated are subject to inhibition or inactivation, all four systems exhibit threshold properties akin to excitable systems like neuron firing. For those that are amenable to mathematical analysis, expressions are derived that relate the excitation threshold to the kinetics of enzyme generation and inhibition and the initial conditions. For the most complex system, it was expedient to employ numerical simulation to demonstrate threshold behavior, and in this case long-range feedback was seen to have two distinct effects. At sufficiently high catalytic rates, this feedback is capable of exciting an otherwise subthreshold system. At lower catalytic rates, where the long-range feedback does not significantly affect the threshold, it nonetheless has a major effect in potentiating the response above the threshold. In particular, oscillatory behavior observed in simulations of sequential feedback loops is abolished when a long-range feedback is present.

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Year:  1995        PMID: 7568009      PMCID: PMC41043          DOI: 10.1073/pnas.92.19.8744

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Interaction of feedback control and product inhibition in the activation of factor X by factors IXa and VIII.

Authors:  J Jesty
Journal:  Haemostasis       Date:  1991

2.  Activation of porcine factor VIII:C by thrombin and factor Xa.

Authors:  P Lollar; G J Knutson; D N Fass
Journal:  Biochemistry       Date:  1985-12-31       Impact factor: 3.162

3.  Mathematical analysis of a proteolytic positive-feedback loop: dependence of lag time and enzyme yields on the initial conditions and kinetic parameters.

Authors:  J Jesty; E Beltrami; G Willems
Journal:  Biochemistry       Date:  1993-06-22       Impact factor: 3.162

4.  A model for the tissue factor pathway to thrombin. II. A mathematical simulation.

Authors:  K C Jones; K G Mann
Journal:  J Biol Chem       Date:  1994-09-16       Impact factor: 5.157

5.  Stabilization of thrombin-activated porcine factor VIII:C by factor IXa phospholipid.

Authors:  P Lollar; G J Knutson; D N Fass
Journal:  Blood       Date:  1984-06       Impact factor: 22.113

6.  Detection of factor X activation in humans.

Authors:  K A Bauer; B L Kass; H ten Cate; M A Bednarek; J J Hawiger; R D Rosenberg
Journal:  Blood       Date:  1989-11-01       Impact factor: 22.113

7.  Factor VII autoactivation proceeds via interaction of distinct protease-cofactor and zymogen-cofactor complexes. Implications of a two-dimensional enzyme kinetic mechanism.

Authors:  P F Neuenschwander; M M Fiore; J H Morrissey
Journal:  J Biol Chem       Date:  1993-10-15       Impact factor: 5.157

8.  A model for the tissue factor pathway to thrombin. I. An empirical study.

Authors:  J H Lawson; M Kalafatis; S Stram; K G Mann
Journal:  J Biol Chem       Date:  1994-09-16       Impact factor: 5.157

9.  Autoactivation of human Hageman factor. Demonstration utilizing a synthetic substrate.

Authors:  M Silverberg; J T Dunn; L Garen; A P Kaplan
Journal:  J Biol Chem       Date:  1980-08-10       Impact factor: 5.157

10.  The activation and inactivation of human factor VIII by thrombin: effect of inhibitors of thrombin.

Authors:  M B Hultin; J Jesty
Journal:  Blood       Date:  1981-03       Impact factor: 22.113

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  15 in total

1.  Task-oriented modular decomposition of biological networks: trigger mechanism in blood coagulation.

Authors:  Mikhail A Panteleev; Anna N Balandina; Elena N Lipets; Mikhail V Ovanesov; Fazoil I Ataullakhanov
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Positive feedback loops for factor V and factor VII activation supply sensitivity to local surface tissue factor density during blood coagulation.

Authors:  A N Balandina; A M Shibeko; D A Kireev; A A Novikova; I I Shmirev; M A Panteleev; F I Ataullakhanov
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

3.  Interlinked fast and slow positive feedback loops drive reliable cell decisions.

Authors:  Onn Brandman; James E Ferrell; Rong Li; Tobias Meyer
Journal:  Science       Date:  2005-10-21       Impact factor: 47.728

4.  Modular chemical mechanism predicts spatiotemporal dynamics of initiation in the complex network of hemostasis.

Authors:  Christian J Kastrup; Matthew K Runyon; Feng Shen; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-16       Impact factor: 11.205

5.  Rate of mixing controls rate and outcome of autocatalytic processes: theory and microfluidic experiments with chemical reactions and blood coagulation.

Authors:  Rebecca R Pompano; Hung-Wing Li; Rustem F Ismagilov
Journal:  Biophys J       Date:  2008-04-18       Impact factor: 4.033

6.  A multiscale model of thrombus development.

Authors:  Zhiliang Xu; Nan Chen; Malgorzata M Kamocka; Elliot D Rosen; Mark Alber
Journal:  J R Soc Interface       Date:  2008-07-06       Impact factor: 4.118

7.  Surface-mediated control of blood coagulation: the role of binding site densities and platelet deposition.

Authors:  A L Kuharsky; A L Fogelson
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

8.  The catecholamines up (Catsup) protein of Drosophila melanogaster functions as a negative regulator of tyrosine hydroxylase activity.

Authors:  D G Stathakis; D Y Burton; W E McIvor; S Krishnakumar; T R Wright; J M O'Donnell
Journal:  Genetics       Date:  1999-09       Impact factor: 4.562

9.  Network Topologies That Can Achieve Dual Function of Adaptation and Noise Attenuation.

Authors:  Lingxia Qiao; Wei Zhao; Chao Tang; Qing Nie; Lei Zhang
Journal:  Cell Syst       Date:  2019-09-18       Impact factor: 10.304

10.  Characterization of the threshold response of initiation of blood clotting to stimulus patch size.

Authors:  Christian J Kastrup; Feng Shen; Matthew K Runyon; Rustem F Ismagilov
Journal:  Biophys J       Date:  2007-06-22       Impact factor: 4.033

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