Literature DB >> 17043240

Modular chemical mechanism predicts spatiotemporal dynamics of initiation in the complex network of hemostasis.

Christian J Kastrup1, Matthew K Runyon, Feng Shen, Rustem F Ismagilov.   

Abstract

This article demonstrates that a simple chemical model system, built by using a modular approach, may be used to predict the spatiotemporal dynamics of initiation of blood clotting in the complex network of hemostasis. Microfluidics was used to create in vitro environments that expose both the complex network and the model system to surfaces patterned with patches presenting clotting stimuli. Both systems displayed a threshold response, with clotting initiating only on isolated patches larger than a threshold size. The magnitude of the threshold patch size for both systems was described by the Damköhler number, measuring competition of reaction and diffusion. Reaction produces activators at the patch, and diffusion removes activators from the patch. The chemical model made additional predictions that were validated experimentally with human blood plasma. These experiments show that blood can be exposed to significant amounts of clot-inducing stimuli, such as tissue factor, without initiating clotting. Overall, these results demonstrate that such chemical model systems, implemented with microfluidics, may be used to predict spatiotemporal dynamics of complex biochemical networks.

Entities:  

Mesh:

Year:  2006        PMID: 17043240      PMCID: PMC1635074          DOI: 10.1073/pnas.0605560103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Spatiotemporal dynamics of fibrin formation and spreading of active thrombin entering non-recalcified plasma by diffusion.

Authors:  Y V Krasotkina; E I Sinauridze; F I Ataullakhanov
Journal:  Biochim Biophys Acta       Date:  2000-05-01

2.  Design and control of wave propagation patterns in excitable media.

Authors:  Tatsunari Sakurai; Eugene Mihaliuk; Florin Chirila; Kenneth Showalter
Journal:  Science       Date:  2002-05-02       Impact factor: 47.728

3.  Spatiotemporal addressing of surface activity.

Authors:  J Wolff; A G Papathanasiou; I G Kevrekidis; H H Rotermund; G Ertl
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

4.  A positive-feedback-based bistable 'memory module' that governs a cell fate decision.

Authors:  Wen Xiong; James E Ferrell
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

Review 5.  Reconstruction of genetic circuits.

Authors:  David Sprinzak; Michael B Elowitz
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

6.  Active tissue factor in blood?

Authors:  Saulius Butenas; Kenneth G Mann
Journal:  Nat Med       Date:  2004-11       Impact factor: 53.440

7.  Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation.

Authors:  A Goldbeter; G Dupont; M J Berridge
Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

Review 8.  Surface-dependent reactions of the vitamin K-dependent enzyme complexes.

Authors:  K G Mann; M E Nesheim; W R Church; P Haley; S Krishnaswamy
Journal:  Blood       Date:  1990-07-01       Impact factor: 22.113

9.  The composition of coronary-artery plaques.

Authors:  M J Davies
Journal:  N Engl J Med       Date:  1997-05-01       Impact factor: 91.245

10.  An amplified sensitivity arising from covalent modification in biological systems.

Authors:  A Goldbeter; D E Koshland
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

View more
  30 in total

1.  Task-oriented modular decomposition of biological networks: trigger mechanism in blood coagulation.

Authors:  Mikhail A Panteleev; Anna N Balandina; Elena N Lipets; Mikhail V Ovanesov; Fazoil I Ataullakhanov
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Predicting complex biology with simple chemistry.

Authors:  Irving R Epstein
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-16       Impact factor: 11.205

Review 3.  Can we build synthetic, multicellular systems by controlling developmental signaling in space and time?

Authors:  Rustem F Ismagilov; Michel M Maharbiz
Journal:  Curr Opin Chem Biol       Date:  2007-11-19       Impact factor: 8.822

4.  Using chemistry and microfluidics to understand the spatial dynamics of complex biological networks.

Authors:  Christian J Kastrup; Matthew K Runyon; Elena M Lucchetta; Jessica M Price; Rustem F Ismagilov
Journal:  Acc Chem Res       Date:  2008-01-25       Impact factor: 22.384

5.  Trapping the nematode on a micro chip for the future of science.

Authors:  John X J Zhang
Journal:  HFSP J       Date:  2007-11-29

6.  The chemistrode: a droplet-based microfluidic device for stimulation and recording with high temporal, spatial, and chemical resolution.

Authors:  Delai Chen; Wenbin Du; Ying Liu; Weishan Liu; Andrey Kuznetsov; Felipe E Mendez; Louis H Philipson; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-30       Impact factor: 11.205

7.  Rate of mixing controls rate and outcome of autocatalytic processes: theory and microfluidic experiments with chemical reactions and blood coagulation.

Authors:  Rebecca R Pompano; Hung-Wing Li; Rustem F Ismagilov
Journal:  Biophys J       Date:  2008-04-18       Impact factor: 4.033

8.  Confinement regulates complex biochemical networks: initiation of blood clotting by "diffusion acting".

Authors:  Feng Shen; Rebecca R Pompano; Christian J Kastrup; Rustem F Ismagilov
Journal:  Biophys J       Date:  2009-10-21       Impact factor: 4.033

9.  A novel μ-fluidic whole blood coagulation assay based on Rayleigh surface-acoustic waves as a point-of-care method to detect anticoagulants.

Authors:  Sascha Meyer Dos Santos; Anita Zorn; Zeno Guttenberg; Bettina Picard-Willems; Christina Kläffling; Karen Nelson; Ute Klinkhardt; Sebastian Harder
Journal:  Biomicrofluidics       Date:  2013-10-04       Impact factor: 2.800

Review 10.  Systems biology of coagulation.

Authors:  S L Diamond
Journal:  J Thromb Haemost       Date:  2013-06       Impact factor: 5.824

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.