Literature DB >> 18424502

Rate of mixing controls rate and outcome of autocatalytic processes: theory and microfluidic experiments with chemical reactions and blood coagulation.

Rebecca R Pompano1, Hung-Wing Li, Rustem F Ismagilov.   

Abstract

This article demonstrates that the rate of mixing can regulate the rate and outcome of both biological and nonbiological autocatalytic reaction systems that display a threshold response to the concentration of an activator. Plug-based microfluidics was used to control the timing of reactions, the rate of mixing, and surface chemistry in blood clotting and its chemical model. Initiation of clotting of human blood plasma required addition of a critical concentration of thrombin. Clotting could be prevented by rapid mixing when thrombin was added near the critical concentration, and mixing also affected the rate of clotting when thrombin was added at concentrations far above the critical concentration in two clinical clotting assays for human plasma. This phenomenon was modeled by a simple mechanism--local and global competition between the clotting reaction, which autocatalytically produces an activator, and mixing, which removes the activator. Numerical simulations showed that the Damköhler number, which describes this competition, predicts the effects of mixing. Many biological systems are controlled by thresholds, and these results shed light on the dynamics of these systems in the presence of spatial heterogeneities and provide simple guidelines for designing and interpreting experiments with such systems.

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Year:  2008        PMID: 18424502      PMCID: PMC2479617          DOI: 10.1529/biophysj.108.129486

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  55 in total

1.  Quantitative measurements of mixing intensity in shake-flasks and stirred tank reactors. Use of the Mixmeter, a mixing process analyzer.

Authors:  D F. Gerson; M M. Kole
Journal:  Biochem Eng J       Date:  2001-03       Impact factor: 3.978

2.  Chaotic flow: the physics of species coexistence.

Authors:  G Károlyi; A Péntek; I Scheuring; T Tél; Z Toroczkai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

3.  Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors.

Authors:  Benjamin Kerr; Margaret A Riley; Marcus W Feldman; Brendan J M Bohannan
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

4.  Modeling of mixing in 96-well microplates observed with fluorescence indicators.

Authors:  Svenja Weiss; Gernot T John; Ingo Klimant; Elmar Heinzle
Journal:  Biotechnol Prog       Date:  2002 Jul-Aug

5.  A synthetic reaction network: chemical amplification using nonequilibrium autocatalytic reactions coupled in time.

Authors:  Cory J Gerdts; David E Sharoyan; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2004-05-26       Impact factor: 15.419

6.  On-chip titration of an anticoagulant argatroban and determination of the clotting time within whole blood or plasma using a plug-based microfluidic system.

Authors:  Helen Song; Hung-Wing Li; Matthew S Munson; Thuong G Van Ha; Rustem F Ismagilov
Journal:  Anal Chem       Date:  2006-07-15       Impact factor: 6.986

Review 7.  Mathematical modeling and computer simulation in blood coagulation.

Authors:  Fazoil I Ataullakhanov; Mikhail A Panteleev
Journal:  Pathophysiol Haemost Thromb       Date:  2005

8.  Effects of shear rate on propagation of blood clotting determined using microfluidics and numerical simulations.

Authors:  Matthew K Runyon; Christian J Kastrup; Bethany L Johnson-Kerner; Thuong G Van Ha; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2008-02-27       Impact factor: 15.419

9.  Controlling nonspecific protein adsorption in a plug-based microfluidic system by controlling interfacial chemistry using fluorous-phase surfactants.

Authors:  L Spencer Roach; Helen Song; Rustem F Ismagilov
Journal:  Anal Chem       Date:  2005-02-01       Impact factor: 6.986

10.  Rheological aspects of thrombosis and haemostasis: basic principles and applications. ICTH-Report--Subcommittee on Rheology of the International Committee on Thrombosis and Haemostasis.

Authors:  H L Goldsmith; V T Turitto
Journal:  Thromb Haemost       Date:  1986-06-30       Impact factor: 5.249

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  12 in total

Review 1.  Microfluidic stochastic confinement enhances analysis of rare cells by isolating cells and creating high density environments for control of diffusible signals.

Authors:  Meghan E Vincent; Weishan Liu; Elizabeth B Haney; Rustem F Ismagilov
Journal:  Chem Soc Rev       Date:  2010-01-12       Impact factor: 54.564

2.  Defined spatial structure stabilizes a synthetic multispecies bacterial community.

Authors:  Hyun Jung Kim; James Q Boedicker; Jang Wook Choi; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-14       Impact factor: 11.205

3.  Reconfigurable open microfluidics for studying the spatiotemporal dynamics of paracrine signalling.

Authors:  Jiaquan Yu; Erwin Berthier; Alexandria Craig; Theodorus E de Groot; Sidney Sparks; Patrick N Ingram; David F Jarrard; Wei Huang; David J Beebe; Ashleigh B Theberge
Journal:  Nat Biomed Eng       Date:  2019-08-19       Impact factor: 25.671

4.  Confinement regulates complex biochemical networks: initiation of blood clotting by "diffusion acting".

Authors:  Feng Shen; Rebecca R Pompano; Christian J Kastrup; Rustem F Ismagilov
Journal:  Biophys J       Date:  2009-10-21       Impact factor: 4.033

5.  On the simultaneous motions of many blood cells.

Authors:  Eugene C Eckstein
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

6.  Control of initiation, rate, and routing of spontaneous capillary-driven flow of liquid droplets through microfluidic channels on SlipChip.

Authors:  Rebecca R Pompano; Carol E Platt; Mikhail A Karymov; Rustem F Ismagilov
Journal:  Langmuir       Date:  2012-01-10       Impact factor: 3.882

7.  User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments.

Authors:  Liang Li; Wenbin Du; Rustem Ismagilov
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

8.  Spatial localization of bacteria controls coagulation of human blood by 'quorum acting'.

Authors:  Christian J Kastrup; James Q Boedicker; Andrei P Pomerantsev; Mahtab Moayeri; Yao Bian; Rebecca R Pompano; Timothy R Kline; Patricia Sylvestre; Feng Shen; Stephen H Leppla; Wei-Jen Tang; Rustem F Ismagilov
Journal:  Nat Chem Biol       Date:  2008-12       Impact factor: 15.040

9.  Measuring fate and rate of single-molecule competition of amplification and restriction digestion, and its use for rapid genotyping tested with hepatitis C viral RNA.

Authors:  Bing Sun; Jesus Rodriguez-Manzano; David A Selck; Eugenia Khorosheva; Mikhail A Karymov; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-02       Impact factor: 15.336

Review 10.  Microfluidics and coagulation biology.

Authors:  Thomas V Colace; Garth W Tormoen; Owen J T McCarty; Scott L Diamond
Journal:  Annu Rev Biomed Eng       Date:  2013-05-03       Impact factor: 9.590

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