Literature DB >> 7528812

Tracing the spread of fibronectin type III domains in bacterial glycohydrolases.

E Little1, P Bork, R F Doolittle.   

Abstract

The evolutionary spread of 22 fibronectin type III (Fn3) sequences among a dozen bacterial enzymes has been traced by searching databases with the non-Fn3 parts of the enzyme sequences. Numerous homologues were found that lacked the Fn3 domains. In each case the related sequences were aligned, phylogenetic trees were constructed, and the occurrences of Fn3 units on the trees were noted. Comparison with phylogenetic trees prepared from the Fn3 segments themselves allowed inferences to be made about when the Fn3 units were shuffled into their present positions.

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Year:  1994        PMID： 7528812     DOI： 10.1007/bf00160409

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  46 in total

Review 1.  Evolution by acquisition: the case for horizontal gene transfers.

Authors:  M W Smith; D F Feng; R F Doolittle
Journal:  Trends Biochem Sci       Date:  1992-12       Impact factor: 13.807

Review 2.  Analyzing the mosaic structure of genes.

Authors:  J M Smith
Journal:  J Mol Evol       Date:  1992-02       Impact factor: 2.395

3.  Structure of the gene encoding chitinase D of Bacillus circulans WL-12 and possible homology of the enzyme to other prokaryotic chitinases and class III plant chitinases.

Authors:  T Watanabe; W Oyanagi; K Suzuki; K Ohnishi; H Tanaka
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

4.  Multiple domains in endoglucanase B (CenB) from Cellulomonas fimi: functions and relatedness to domains in other polypeptides.

Authors:  A Meinke; N R Gilkes; D G Kilburn; R C Miller; R A Warren
Journal:  J Bacteriol       Date:  1991-11       Impact factor: 3.490

5.  Structural design and molecular evolution of a cytokine receptor superfamily.

Authors:  J F Bazan
Journal:  Proc Natl Acad Sci U S A       Date:  1990-09       Impact factor: 11.205

6.  Nearest neighbor procedure for relating progressively aligned amino acid sequences.

Authors:  R F Doolittle; D F Feng
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

7.  New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.

Authors:  B Henrissat; A Bairoch
Journal:  Biochem J       Date:  1993-08-01       Impact factor: 3.857

8.  Drosophila kelch motif is derived from a common enzyme fold.

Authors:  P Bork; R F Doolittle
Journal:  J Mol Biol       Date:  1994-03-11       Impact factor: 5.469

9.  Human growth hormone and extracellular domain of its receptor: crystal structure of the complex.

Authors:  A M de Vos; M Ultsch; A A Kossiakoff
Journal:  Science       Date:  1992-01-17       Impact factor: 47.728

10.  Substrate competition and specificity at the active site of amylopullulanase from Clostridium thermohydrosulfuricum.

Authors:  S Mathupala; B C Saha; J G Zeikus
Journal:  Biochem Biophys Res Commun       Date:  1990-01-15       Impact factor: 3.575
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  41 in total

1.  The third chitinase gene (chiC) of Serratia marcescens 2170 and the relationship of its product to other bacterial chitinases.

Authors:  K Suzuki; M Taiyoji; N Sugawara; N Nikaidou; B Henrissat; T Watanabe
Journal:  Biochem J       Date:  1999-11-01       Impact factor: 3.857

Review 2.  Why metronidazole is active against both bacteria and parasites.

Authors:  J Samuelson
Journal:  Antimicrob Agents Chemother       Date:  1999-07       Impact factor: 5.191

3.  HYR, an extracellular module involved in cellular adhesion and related to the immunoglobulin-like fold.

Authors:  I Callebaut; D Gilgès; I Vigon; J P Mornon
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

4.  Structure of a fibronectin type III-like module from Clostridium thermocellum.

Authors:  Markus Alahuhta; Qi Xu; Roman Brunecky; William S Adney; Shi-You Ding; Michael E Himmel; Vladimir V Lunin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-07-27

5.  Biochemical characterization of engineered amylopullulanase from Thermoanaerobacter ethanolicus 39E-implicating the non-necessity of its 100 C-terminal amino acid residues.

Authors:  Hsu-Yang Lin; Hsu-Han Chuang; Fu-Pang Lin
Journal:  Extremophiles       Date:  2008-05-24       Impact factor: 2.395

6.  Multidomain structure and cellulosomal localization of the Clostridium thermocellum cellobiohydrolase CbhA.

Authors:  V V Zverlov; G V Velikodvorskaya; W H Schwarz; K Bronnenmeier; J Kellermann; W L Staudenbauer
Journal:  J Bacteriol       Date:  1998-06       Impact factor: 3.490

7.  Members of the immunoglobulin superfamily in bacteria.

Authors:  A Bateman; S R Eddy; C Chothia
Journal:  Protein Sci       Date:  1996-09       Impact factor: 6.725

8.  Rotavirus enterotoxin NSP4 binds to the extracellular matrix proteins laminin-beta3 and fibronectin.

Authors:  J A Boshuizen; J W A Rossen; C K Sitaram; F F P Kimenai; Y Simons-Oosterhuis; C Laffeber; H A Büller; A W C Einerhand
Journal:  J Virol       Date:  2004-09       Impact factor: 5.103

9.  Calcium and domain interactions contribute to the thermostability of domains of the multimodular cellobiohydrolase, CbhA, a subunit of the Clostridium thermocellum cellulosome.

Authors:  Irina A Kataeva; Vladimir N Uversky; Lars G Ljungdahl
Journal:  Biochem J       Date:  2003-05-15       Impact factor: 3.857

10.  The fibronectin type 3-like repeat from the Clostridium thermocellum cellobiohydrolase CbhA promotes hydrolysis of cellulose by modifying its surface.

Authors:  Irina A Kataeva; Ronald D Seidel; Ashit Shah; Larry T West; Xin-Liang Li; Lars G Ljungdahl
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792
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