Literature DB >> 1556748

Analyzing the mosaic structure of genes.

J M Smith1.   

Abstract

Some genes in prokaryotes consist of a mosaic of regions derived from different ancestors by horizontal gene transfer. A method is described for demonstrating the statistical significance of such mosaic structure and for locating the crossover points separating different regions.

Mesh：

Year:  1992        PMID： 1556748     DOI： 10.1007/bf00182389

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  8 in total

1.  Horizontal transfer of penicillin-binding protein genes in penicillin-resistant clinical isolates of Streptococcus pneumoniae.

Authors:  C G Dowson; A Hutchison; J A Brannigan; R C George; D Hansman; J Liñares; A Tomasz; J M Smith; B G Spratt
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

2.  Role of interspecies transfer of chromosomal genes in the evolution of penicillin resistance in pathogenic and commensal Neisseria species.

Authors:  B G Spratt; L D Bowler; Q Y Zhang; J Zhou; J M Smith
Journal:  J Mol Evol       Date:  1992-02       Impact factor: 2.395

3.  Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli.

Authors:  R F DuBose; D E Dykhuizen; D L Hartl
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

4.  Statistical methods of DNA sequence analysis: detection of intragenic recombination or gene conversion.

Authors:  J C Stephens
Journal:  Mol Biol Evol       Date:  1985-11       Impact factor: 16.240

5.  Hybrid penicillin-binding proteins in penicillin-resistant strains of Neisseria gonorrhoeae.

Authors:  B G Spratt
Journal:  Nature       Date:  1988-03-10       Impact factor: 49.962

6.  Statistical tests for detecting gene conversion.

Authors:  S Sawyer
Journal:  Mol Biol Evol       Date:  1989-09       Impact factor: 16.240

7.  Independent gene evolution in the potato actin gene family demonstrated by phylogenetic procedures for resolving gene conversions and the phylogeny of angiosperm actin genes.

Authors:  G Drouin; G A Dover
Journal:  J Mol Evol       Date:  1990-08       Impact factor: 2.395

8.  Recruitment of a penicillin-binding protein gene from Neisseria flavescens during the emergence of penicillin resistance in Neisseria meningitidis.

Authors:  B G Spratt; Q Y Zhang; D M Jones; A Hutchison; J A Brannigan; C G Dowson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205
  8 in total
  617 in total

1.  The detection and measurement of recombination from sequence data.

Authors:  J M Smith
Journal:  Genetics       Date:  1999-10       Impact factor: 4.562

2.  Vacuolating cytotoxin (vacA) alleles of Helicobacter pylori comprise two geographically widespread types, m1 and m2, and have evolved through limited recombination.

Authors:  J C Atherton; P M Sharp; T L Cover; G Gonzalez-Valencia; R M Peek; S A Thompson; C J Hawkey; M J Blaser
Journal:  Curr Microbiol       Date:  1999-10       Impact factor: 2.188

3.  Widespread intra-serotype recombination in natural populations of dengue virus.

Authors:  M Worobey; A Rambaut; E C Holmes
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

4.  Sequence variation in the porA gene of a clone of Neisseria meningitidis during epidemic spread.

Authors:  J Jelfs; R Munro; E Wedege; D A Caugant
Journal:  Clin Diagn Lab Immunol       Date:  2000-05

5.  Distribution of the mosaic structured murM genes among natural populations of Streptococcus pneumoniae.

Authors:  S R Filipe; E Severina; A Tomasz
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

6.  Evaluation of methods for detecting recombination from DNA sequences: computer simulations.

Authors:  D Posada; K A Crandall
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

7.  Acquisition of the rfb-gnd cluster in evolution of Escherichia coli O55 and O157.

Authors:  P I Tarr; L M Schoening; Y L Yea; T R Ward; S Jelacic; T S Whittam
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

8.  Divergent evolution of norovirus GII/4 by genome recombination from May 2006 to February 2009 in Japan.

Authors:  Kazushi Motomura; Masaru Yokoyama; Hirotaka Ode; Hiromi Nakamura; Hiromi Mori; Tadahito Kanda; Tomoichiro Oka; Kazuhiko Katayama; Mamoru Noda; Tomoyuki Tanaka; Naokazu Takeda; Hironori Sato
Journal:  J Virol       Date:  2010-06-09       Impact factor: 5.103

9.  Complete nucleotide sequence analysis of Cymbidium mosaic virus Indian isolate: further evidence for natural recombination among potexviruses.

Authors:  Ang Rinzing Sherpa; Vipin Hallan; Promila Pathak; Aijaz Asghar Zaidi
Journal:  J Biosci       Date:  2007-06       Impact factor: 1.826

10.  Complete genomic sequence analyses of Turnip mosaic virus basal-BR isolates from China.

Authors:  Hong-Yan Wang; Jin-Liang Liu; Rui Gao; Jia Chen; Yun-Hua Shao; Xiang-Dong Li
Journal:  Virus Genes       Date:  2009-02-24       Impact factor: 2.332
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