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Literature DB >> 7433103

A new computer method for the storage and manipulation of DNA gel reading data.

Abstract

This paper describes a new way of storing DNA gel reading data and an accompanying set of computer programs. These programs will perform all the manipulations that are required on data gained by the so-called 'shotgun' method of DNA sequencing. This system simplifies the computer processing involved with this sequencing method and also has the capability of being able at any time during a project to display, lined up in register, all the gel reading covering any section of the sequence.

Mesh：

Substances：
Gels
DNA

Year: 1980 PMID： 7433103 PMCID： PMC324183 DOI： 10.1093/nar/8.16.3673

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

5 in total

1. A strategy of DNA sequencing employing computer programs.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1979-06-11 Impact factor: 16.971

2. Further procedures for sequence analysis by computer.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1978-03 Impact factor: 16.971

3. A computer program to search for tRNA genes.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1980-02-25 Impact factor: 16.971

4. Computer programs for the assembly of DNA sequences.

Authors: T R Gingeras; J P Milazzo; D Sciaky; R J Roberts
Journal: Nucleic Acids Res Date: 1979-09-25 Impact factor: 16.971

5. Sequence data handling by computer.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1977-11 Impact factor: 16.971

5 in total

254 in total

1. CAP3: A DNA sequence assembly program.

Authors: X Huang; A Madan
Journal: Genome Res Date: 1999-09 Impact factor: 9.043

2. Transcriptional mapping and nucleotide sequence of a vaccinia virus gene encoding a polypeptide with extensive homology to DNA ligases.

Authors: G L Smith; Y S Chan; S M Kerr
Journal: Nucleic Acids Res Date: 1989-11-25 Impact factor: 16.971

3. Characterization and nucleotide sequence of a novel gene fixW upstream of the fixABC operon in Rhizobium leguminosarum.

Authors: J G Hontelez; R K Lankhorst; P Katinakis; R C van den Bos; A van Kammen
Journal: Mol Gen Genet Date: 1989-09

A new computer method for the storage and manipulation of DNA gel reading data.

1. A strategy of DNA sequencing employing computer programs.

2. Further procedures for sequence analysis by computer.

3. A computer program to search for tRNA genes.

4. Computer programs for the assembly of DNA sequences.

5. Sequence data handling by computer.

1. CAP3: A DNA sequence assembly program.

2. Transcriptional mapping and nucleotide sequence of a vaccinia virus gene encoding a polypeptide with extensive homology to DNA ligases.

3. Characterization and nucleotide sequence of a novel gene fixW upstream of the fixABC operon in Rhizobium leguminosarum.

4. The VANA glycopeptide resistance protein is related to D-alanyl-D-alanine ligase cell wall biosynthesis enzymes.

5. PCAP: a whole-genome assembly program.

6. The transcriptome of the early life history stages of the California Sea Hare Aplysia californica.

7. Structure and transcription of the Drosophila melanogaster vermilion gene and several mutant alleles.

8. Vaccinia virus encodes a thymidylate kinase gene: sequence and transcriptional mapping.

9. Nucleotide sequence encoding the iron-sulphur protein subunit of the succinate dehydrogenase of Escherichia coli.

10. Gene products specifying adhesion of uropathogenic Escherichia coli are minor components of pili.