Literature DB >> 743234

Generalized microscopic reversibility, kinetic co-operativity of enzymes and evolution.

J Ricard.   

Abstract

Generalized microscopic reversibility implies that the apparent rate of any catalytic process in a complex mechanism is paralleled by substrate desorption in such a way that this ratio is held constant within the reaction mechanism [Whitehead (1976) Biochem. J. 159, 449--456]. The physical and evolutionary significances of this concept, for both polymeric and monomeric enzymes, are discussed. For polymeric enzymes, generalized microscopic reversibility of necessity occurs if, within the same reaction sequence, the substrate stabilizes one type of conformation of the active site only. Generalized microscopic reversibility suppresses the kinetic co-operativity of the slow transition model [Ainslie, Shill & Neet (1972) J. Biol. Chem. 247, 7088--7096]. This situation is obtained if the free-energy difference between the corresponding transition states of the two enzyme forms is held constant along the reaction co-ordinate. This situation implies that the 'extra costs' of energy (required to pass each energy barrier) that are not covered by the corresponding binding energies of the transition states vary in a similar way along the two reaction co-ordinates. The regulatory behaviour of monomeric enzymes is discussed in the light of the concept of 'catalytic perfection' proposed by Albery & Knowles [(1976) Biochemistry 15, 5631--5640]. These authors claim that an enzyme will be catalytically 'perfect' when its catalytic efficiency is maximum. If this situation occurs for a monomeric enzyme obeying either the slow transition or the mnemonical model, it can be shown that the kinetic co-operativity disappears. In other words, kinetic co-operativity of a monomeric enzyme is 'paid for' at the expense of catalytic efficiency, and the monomeric enzyme cannot be simultaneously co-operative and catalytically very efficient. This is precisely what has been found experimentally in a number of cases.

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Year:  1978        PMID: 743234      PMCID: PMC1186138          DOI: 10.1042/bj1750779

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  24 in total

Review 1.  Binding energy, specificity, and enzymic catalysis: the circe effect.

Authors:  W P Jencks
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1975

2.  Simplifications of the derivations and forms of steady-state equations for non-equilibrium random substrate-modifier and allosteric enzyme mechanisms.

Authors:  E P Whitehead
Journal:  Biochem J       Date:  1976-12-01       Impact factor: 3.857

3.  The effect of natural selection on enzymic catalysis.

Authors:  A Cornish-Bowden
Journal:  J Mol Biol       Date:  1976-02-15       Impact factor: 5.469

4.  Transients and cooperativity. A slow transition model for relating transients and cooperative kinetics of enzymes.

Authors:  G R Ainslie; J P Shill; K E Neet
Journal:  J Biol Chem       Date:  1972-11-10       Impact factor: 5.157

5.  Subunit interactions in enzyme catalysis. Kinetic models for one-substrate polymeric enzymes.

Authors:  J Ricard; C Mouttet; J Nari
Journal:  Eur J Biochem       Date:  1974-02-01

6.  Transition state analogues for enzyme catalysis.

Authors:  R Wolfenden
Journal:  Nature       Date:  1969-08-16       Impact factor: 49.962

7.  Kinetic aspects of regulation of metabolic processes. The hysteretic enzyme concept.

Authors:  C Frieden
Journal:  J Biol Chem       Date:  1970-11-10       Impact factor: 5.157

8.  Interpretation of nonhyperbolic behavior in enzymic systems. II. Quantitative characteristics of rate and binding functions.

Authors:  L Endrenyi; M S Chan; J T Wong
Journal:  Can J Biochem       Date:  1971-05

9.  Activators of yeast hexokinase.

Authors:  D P Kosow; I A Rose
Journal:  J Biol Chem       Date:  1971-04-25       Impact factor: 5.157

10.  The pre-eminence of k(cat) in the manifestation of optimal enzymic activity delineated by using the Briggs-Haldane two-step irreversible kinetic model.

Authors:  K Brocklehurst; A Cornish-Bowden
Journal:  Biochem J       Date:  1976-10-01       Impact factor: 3.857

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  7 in total

1.  The linear form of a group II intron catalyzes efficient autocatalytic reverse splicing, establishing a potential for mobility.

Authors:  Michael Roitzsch; Anna Marie Pyle
Journal:  RNA       Date:  2009-01-23       Impact factor: 4.942

2.  The evolution of enzyme kinetic power.

Authors:  T Keleti; G R Welch
Journal:  Biochem J       Date:  1984-10-15       Impact factor: 3.857

3.  Deviations from Michaelis-Menten kinetics. The possibility of complicated curves for simple kinetic schemes and the computer fitting of experimental data for acetylcholinesterase, acid phosphatase, adenosine deaminase, arylsulphatase, benzylamine oxidase, chymotrypsin, fumarase, galactose dehydrogenase, beta-galactosidase, lactate dehydrogenase, peroxidase and xanthine oxidase.

Authors:  W G Bardsley; P Leff; J Kavanagh; R D Waight
Journal:  Biochem J       Date:  1980-06-01       Impact factor: 3.857

4.  On an alleged exception to generalized microscopic reversibility as a condition for reduction in degree of steady-state kinetic equations.

Authors:  E P Whithead
Journal:  Biochem J       Date:  1981-11-01       Impact factor: 3.857

Review 5.  Cooperativity in monomeric enzymes with single ligand-binding sites.

Authors:  Carol M Porter; Brian G Miller
Journal:  Bioorg Chem       Date:  2011-11-17       Impact factor: 5.275

6.  The origin of kinetic cooperativity in prebiotic catalysts.

Authors:  J Ricard; J Vergne; J L Decout; M C Maurel
Journal:  J Mol Evol       Date:  1996-10       Impact factor: 2.395

7.  A general framework for thermodynamically consistent parameterization and efficient sampling of enzymatic reactions.

Authors:  Pedro Saa; Lars K Nielsen
Journal:  PLoS Comput Biol       Date:  2015-04-14       Impact factor: 4.475

  7 in total

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