Literature DB >> 19168748

The linear form of a group II intron catalyzes efficient autocatalytic reverse splicing, establishing a potential for mobility.

Michael Roitzsch1, Anna Marie Pyle.   

Abstract

Self-splicing group II introns catalyze their own excision from pre-RNAs, thereby joining the flanking exons. The introns can be released in a lariat or linear form. Lariat introns have been shown to reverse the splicing reaction; in contrast, linear introns are generally believed to perform no or only poor reverse splicing. Here, we show that a linear group II intron derived from ai5gamma can reverse the second step of splicing with unexpectedly high efficiency and precision. Moreover, the linear intron generates dramatically more reverse-splicing product than its lariat equivalent. The finding that linear group II introns can readily undergo the critical first step of mobility by catalyzing efficient reverse splicing into complementary target molecules demonstrates their innate potential for mobility and transposition and raises the possibility that reverse splicing by linear group II introns may have played a significant role in certain forms of intron mobility and lateral gene transfer during evolution.

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Year:  2009        PMID: 19168748      PMCID: PMC2657011          DOI: 10.1261/rna.1392009

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  46 in total

1.  Metal ion catalysis during the exon-ligation step of nuclear pre-mRNA splicing: extending the parallels between the spliceosome and group II introns.

Authors:  P M Gordon; E J Sontheimer; J A Piccirilli
Journal:  RNA       Date:  2000-02       Impact factor: 4.942

2.  A simple and efficient method to transcribe RNAs with reduced 3' heterogeneity.

Authors:  C Kao; S Rüdisser; M Zheng
Journal:  Methods       Date:  2001-03       Impact factor: 3.608

3.  Deletion of a conserved dinucleotide inhibits the second step of group II intron splicing.

Authors:  S Mikheeva; H L Murray; H Zhou; B M Turczyk; K A Jarrell
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

4.  Investigation of adenosine base ionization in the hairpin ribozyme by nucleotide analog interference mapping.

Authors:  S P Ryder; A K Oyelere; J L Padilla; D Klostermeier; D P Millar; S A Strobel
Journal:  RNA       Date:  2001-10       Impact factor: 4.942

5.  Control of branch-site choice by a group II intron.

Authors:  V T Chu; C Adamidi; Q Liu; P S Perlman; A M Pyle
Journal:  EMBO J       Date:  2001-12-03       Impact factor: 11.598

6.  pK(a) perturbation in genomic Hepatitis Delta Virus ribozyme catalysis evidenced by nucleotide analogue interference mapping.

Authors:  Adegboyega K Oyelere; Julia R Kardon; Scott A Strobel
Journal:  Biochemistry       Date:  2002-03-19       Impact factor: 3.162

7.  Mutually exclusive distribution of IS1548 and GBSi1, an active group II intron identified in human isolates of group B streptococci.

Authors:  M Granlund; F Michel; M Norgren
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

8.  Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing.

Authors:  Jörg Vogel; Thomas Börner
Journal:  EMBO J       Date:  2002-07-15       Impact factor: 11.598

9.  Probing the Tetrahymena group I ribozyme reaction in both directions.

Authors:  Katrin Karbstein; Kate S Carroll; Daniel Herschlag
Journal:  Biochemistry       Date:  2002-09-17       Impact factor: 3.162

10.  Two competing pathways for self-splicing by group II introns: a quantitative analysis of in vitro reaction rates and products.

Authors:  D L Daniels; W J Michels; A M Pyle
Journal:  J Mol Biol       Date:  1996-02-16       Impact factor: 5.469

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  10 in total

1.  Selective forces for the origin of spliceosomes.

Authors:  Matej Vesteg; Zuzana Sándorová; Juraj Krajčovič
Journal:  J Mol Evol       Date:  2012-03-11       Impact factor: 2.395

Review 2.  The tertiary structure of group II introns: implications for biological function and evolution.

Authors:  Anna Marie Pyle
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-06       Impact factor: 8.250

Review 3.  Group II introns: mobile ribozymes that invade DNA.

Authors:  Alan M Lambowitz; Steven Zimmerly
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

4.  DEAD-box protein facilitated RNA folding in vivo.

Authors:  Andreas Liebeg; Oliver Mayer; Christina Waldsich
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

5.  Linear group II intron RNAs can retrohome in eukaryotes and may use nonhomologous end-joining for cDNA ligation.

Authors:  Fanglei Zhuang; Marta Mastroianni; Travis B White; Alan M Lambowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-15       Impact factor: 11.205

6.  Relevance of the branch point adenosine, coordination loop, and 3' exon binding site for in vivo excision of the Sinorhizobium meliloti group II intron RmInt1.

Authors:  María Dolores Molina-Sánchez; Antonio Barrientos-Durán; Nicolás Toro
Journal:  J Biol Chem       Date:  2011-04-26       Impact factor: 5.157

7.  DNA cleavage and reverse splicing of ribonucleoprotein particles reconstituted in vitro with linear RmInt1 RNA.

Authors:  María Dolores Molina-Sánchez; Nicolás Toro
Journal:  RNA Biol       Date:  2019-04-14       Impact factor: 4.652

Review 8.  Structural Insights into the Mechanism of Group II Intron Splicing.

Authors:  Chen Zhao; Anna Marie Pyle
Journal:  Trends Biochem Sci       Date:  2017-04-21       Impact factor: 13.807

9.  The 2'-OH group at the group II intron terminus acts as a proton shuttle.

Authors:  Michael Roitzsch; Olga Fedorova; Anna Marie Pyle
Journal:  Nat Chem Biol       Date:  2010-01-31       Impact factor: 15.040

10.  Crystal structure of a eukaryotic group II intron lariat.

Authors:  Aaron R Robart; Russell T Chan; Jessica K Peters; Kanagalaghatta R Rajashankar; Navtej Toor
Journal:  Nature       Date:  2014-09-24       Impact factor: 49.962

  10 in total

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