Literature DB >> 6821369

Deviations from Michaelis-Menten kinetics. The possibility of complicated curves for simple kinetic schemes and the computer fitting of experimental data for acetylcholinesterase, acid phosphatase, adenosine deaminase, arylsulphatase, benzylamine oxidase, chymotrypsin, fumarase, galactose dehydrogenase, beta-galactosidase, lactate dehydrogenase, peroxidase and xanthine oxidase.

W G Bardsley, P Leff, J Kavanagh, R D Waight.   

Abstract

The possible graph shapes for one-site/two-state and substrate-modifier models are discussed. The two-state model is a version of the Monod-Wyman-Changeux model and gives a rate equation with 240 denominator terms. Discussion in terms of K and V effects is not possible. A simplified version of the mechanism can be shown to give v-versus-[S] curves that are either sigmoid or non-sigmoid. They may show substrate inhibition or no final maximum, and the double-reciprocal plots can be concave up or down. The corresponding binding model is determined by only two constants and gives a linear double-reciprocal plot. The substrate-modifier mechanism is a simple example of a mechanism where inclusion of catalytic steps leads to a genuine increase in degree of the rate equation. The v-versus-[S] curve can show such complexities as two maxima and a minimum, and the double-reciprocal plot can cross its asymptote twice, proving the rate equation to be 4:4. A simplified version is 3:3, and analysis shows that at least 18 of the 27 double-reciprocal plots that can arise with 3:3 functions are possible with this particular mechanism. Representative double-reciprocal and Scatchard plots are presented for several sets of rate-constant values. It is concluded that relatively simple mechanisms give pseudo-steady-state rate equations of high degree and considerable complexity. With extended ranges of substrate concentrations there is every reason to believe that experimental data would show the sort of deviations from Michaelis-Menten kinetics seen with calculated curves for such simple mechanisms. Narrow ranges of substrate concentration, on the other hand, would lead to inflexions and curvature being overlooked. It is not possible to discuss such deviations from Michaelis-Menten kinetics in terms of kinetic constants such as Km and V, and, in general, it is also difficult to see any simple way to explain intuitively such features as sigmoidicity, substrate inhibition, double-reciprocal convexity and decrease in degree by cancellation of common factors between numerator and denominator of rate equations. These conclusions apply with even more force when catalytic steps are included, for then the rate equations, are for multi-site mechanisms, of higher degree, allowing increasingly complex curve shapes. A number of enzymes were studied and initial-rate data were fitted by computer.(ABSTRACT TRUNCATED AT 400 WORDS)

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Year:  1980        PMID: 6821369      PMCID: PMC1162459          DOI: 10.1042/bj1870739

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  29 in total

1.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

2.  Some observations on the preparation and properties of dihydronicotinamide-adenine dinucleotide.

Authors:  K DALZIEL
Journal:  Biochem J       Date:  1962-08       Impact factor: 3.857

3.  Simplifications of the derivations and forms of steady-state equations for non-equilibrium random substrate-modifier and allosteric enzyme mechanisms.

Authors:  E P Whitehead
Journal:  Biochem J       Date:  1976-12-01       Impact factor: 3.857

4.  Primary kinetic isotope effects in enzyme-catalysed reactions. A theoretical treatment and new experimental methods of study.

Authors:  W G Bardsley; R D Waight
Journal:  J Theor Biol       Date:  1976-12       Impact factor: 2.691

5.  Alteration of the Kinetic Properties of an Enzyme by the Binding of Buffer, Inhibitor, or Substrate.

Authors:  R A Alberty; R M Bock
Journal:  Proc Natl Acad Sci U S A       Date:  1953-09       Impact factor: 11.205

6.  The quantitative analysis of ligand binding and initial-rate data for allosteric and other complex enzyme mechanisms.

Authors:  W G Bardsley
Journal:  Biochem J       Date:  1976-01-01       Impact factor: 3.857

7.  pH dependence and solvent isotope effects in the hydrolysis of phosphomonoesters by human prostatic acid phosphatase.

Authors:  R L Van Etten; J J McTigue
Journal:  Biochim Biophys Acta       Date:  1977-10-13

8.  Steady-state kinetic studies of the negative co-operativity and flip-flop mechanism for Escherichia coli alkaline phosphatase.

Authors:  R D Waight; P Leff; W G Bardsley
Journal:  Biochem J       Date:  1977-12-01       Impact factor: 3.857

9.  Subunit interactions in enzyme catalysis. Kinetic models for one-substrate polymeric enzymes.

Authors:  J Ricard; C Mouttet; J Nari
Journal:  Eur J Biochem       Date:  1974-02-01

10.  A catalytic mechanism for the enzyme benzylamine oxidase from pig plasma.

Authors:  C E Taylor; R S Taylor; C Rasmussen; P F Knowles
Journal:  Biochem J       Date:  1972-12       Impact factor: 3.857

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  19 in total

1.  Rates of reactions catalysed by a dimeric enzyme. Effects of the reaction scheme and the kinetic parameters on co-operativity.

Authors:  H Ishikawa; H Ogino; H Oshida
Journal:  Biochem J       Date:  1991-11-15       Impact factor: 3.857

2.  An improved approach to steady-state analysis of monoamine oxidases.

Authors:  Rona R Ramsay; Aldo Olivieri; Andrew Holt
Journal:  J Neural Transm (Vienna)       Date:  2011-06-04       Impact factor: 3.575

Review 3.  Biochemical properties of isolated transverse tubular membranes.

Authors:  R A Sabbadini; A S Dahms
Journal:  J Bioenerg Biomembr       Date:  1989-04       Impact factor: 2.945

4.  Pig heart fumarase really does exhibit negative kinetic co-operativity at a constant ionic strength.

Authors:  B B Hasinoff; J P Davey
Journal:  Biochem J       Date:  1986-05-01       Impact factor: 3.857

5.  A computer program for enzyme kinetics that combines model discrimination, parameter refinement and sequential experimental design.

Authors:  R Franco; M T Gavaldà; E I Canela
Journal:  Biochem J       Date:  1986-09-15       Impact factor: 3.857

6.  Kinetic studies of chicken and turkey liver mitochondrial aspartate aminotransferase.

Authors:  M Cascante; A Cortés
Journal:  Biochem J       Date:  1988-03-15       Impact factor: 3.857

7.  The hill coefficient for the Ca2+-activation of striated muscle contraction.

Authors:  J S Shiner; R J Solaro
Journal:  Biophys J       Date:  1984-10       Impact factor: 4.033

8.  Use of the F test for determining the degree of enzyme-kinetic and ligand-binding data. A Monte Carlo simulation study.

Authors:  F J Burguillo; A J Wright; W G Bardsley
Journal:  Biochem J       Date:  1983-04-01       Impact factor: 3.857

9.  A loss-of-function variant of PTPN22 is associated with reduced risk of systemic lupus erythematosus.

Authors:  Valeria Orrú; Sophia J Tsai; Blanca Rueda; Edoardo Fiorillo; Stephanie M Stanford; Jhimli Dasgupta; Jaana Hartiala; Lei Zhao; Norberto Ortego-Centeno; Sandra D'Alfonso; Frank C Arnett; Hui Wu; Miguel A Gonzalez-Gay; Betty P Tsao; Bernardo Pons-Estel; Marta E Alarcon-Riquelme; Yantao He; Zhong-Yin Zhang; Hooman Allayee; Xiaojiang S Chen; Javier Martin; Nunzio Bottini
Journal:  Hum Mol Genet       Date:  2008-11-03       Impact factor: 6.150

10.  The regulatory properties of yeast pyruvate kinase. Effect of fructose 1,6-bisphosphate.

Authors:  C N Morris; S Ainsworth; J Kinderlerer
Journal:  Biochem J       Date:  1986-03-15       Impact factor: 3.857

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