Literature DB >> 7015290

Coding capacity of complementary DNA strands.

A Casino, M Cipollaro, A M Guerrini, G Mastrocinque, A Spena, V Scarlato.   

Abstract

A Fortran computer algorithm has been used to analyze the nucleotide sequence of several structural genes. The analysis performed on both coding and complementary DNA strands shows that whereas open reading frames shorter than 100 codons are randomly distributed on both DNA strands, open reading frames longer than 100 codons ("virtual genes") are significantly more frequent on the complementary DNA strand than on the coding one. These "virtual genes" were further investigated by looking at intron sequences, splicing points, signal sequences and by analyzing gene mutations. On the basis of this analysis coding and complementary DNA strands of several eukaryotic structural genes cannot be distinguished. In particular we suggest that the complementary DNA strand of the human epsilon-globin gene might indeed code for a protein.

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Year:  1981        PMID: 7015290      PMCID: PMC326772          DOI: 10.1093/nar/9.6.1499

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  46 in total

1.  Inhibition of the transformation-specific kinase in ASV-transformed cells by N-alpha-tosyl-L-lysyl chloromethyl ketone.

Authors:  N Richert; P J Davies; G Jay; I Pastan
Journal:  Cell       Date:  1979-10       Impact factor: 41.582

2.  Use of the UGA terminator as a tryptophan codon in yeast mitochondria.

Authors:  G Macino; G Coruzzi; F G Nobrega; M Li; A Tzagoloff
Journal:  Proc Natl Acad Sci U S A       Date:  1979-08       Impact factor: 11.205

3.  Molecular cloning and nucleotide sequence of the human growth hormone structural gene.

Authors:  W G Roskam; F Rougeon
Journal:  Nucleic Acids Res       Date:  1979-09-25       Impact factor: 16.971

4.  DNA sequence for a low-level promoter of the lac repressor gene and an 'up' promoter mutation.

Authors:  M P Calos
Journal:  Nature       Date:  1978-08-24       Impact factor: 49.962

5.  Molecular cloning and sequence analysis of adult chicken betal globin cDNA.

Authors:  R I Richards; J Shine; A Ullrich; J R Wells; H M Goodman
Journal:  Nucleic Acids Res       Date:  1979-11-10       Impact factor: 16.971

6.  Are snRNPs involved in splicing?

Authors:  M R Lerner; J A Boyle; S M Mount; S L Wolin; J A Steitz
Journal:  Nature       Date:  1980-01-10       Impact factor: 49.962

7.  Comparison of total sequence of a cloned rabbit beta-globin gene and its flanking regions with a homologous mouse sequence.

Authors:  A van Ooyen; J van den Berg; N Mantei; C Weissmann
Journal:  Science       Date:  1979-10-19       Impact factor: 47.728

8.  Isolation, cloning and sequence analysis of the cDNA for the alpha-subunit of human chorionic gonadotropin.

Authors:  J C Fiddes; H M Goodman
Journal:  Nature       Date:  1979-10-04       Impact factor: 49.962

9.  Assembly of the mitochondrial membrane system. DNA sequence of subunit 2 of yeast cytochrome oxidase.

Authors:  G Coruzzi; A Tzagoloff
Journal:  J Biol Chem       Date:  1979-09-25       Impact factor: 5.157

10.  Nucleotide sequence of the mitochondrial structural gene for subunit 9 of yeast ATPase complex.

Authors:  L A Hensgens; L A Grivell; P Borst; J L Bos
Journal:  Proc Natl Acad Sci U S A       Date:  1979-04       Impact factor: 11.205

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  12 in total

1.  Origins of genes: "big bang" or continuous creation?

Authors:  P K Keese; A Gibbs
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

2.  Open reading frame in the minus strand of two plus type RNA viruses.

Authors:  L van Vloten-Doting; M Dubelaar; J F Bol
Journal:  Plant Mol Biol       Date:  1982-06       Impact factor: 4.076

3.  Antisense overlapping open reading frames in genes from bacteria to humans.

Authors:  E Merino; P Balbás; J L Puente; F Bolívar
Journal:  Nucleic Acids Res       Date:  1994-05-25       Impact factor: 16.971

4.  Does the 'non-coding' strand code?

Authors:  P M Sharp
Journal:  Nucleic Acids Res       Date:  1985-02-25       Impact factor: 16.971

5.  A flexible new computer program for handling DNA sequence data.

Authors:  M Kröger; A Kröger-Block
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

6.  DNA sequence analysis of a mouse pro alpha 1 (I) procollagen gene: evidence for a mouse B1 element within the gene.

Authors:  J M Monson; J Friedman; B J McCarthy
Journal:  Mol Cell Biol       Date:  1982-11       Impact factor: 4.272

7.  Computer programs for the characterization of protein coding genes.

Authors:  G Pierno; N Barni; M Candurro; M Cipollaro; A Franzè; L Juliano; M F Macchiato; G Mastrocinque; C Moscatelli; V Scarlato
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

8.  Statistical evaluation of the coding capacity of complementary DNA strands.

Authors:  A Tramontano; V Scarlato; N Barni; M Cipollaro; A Franzè; M F Macchiato; A Cascino
Journal:  Nucleic Acids Res       Date:  1984-06-25       Impact factor: 16.971

9.  Complete nucleotide sequence of alfalfa mosaic virus RNA 1.

Authors:  B J Cornelissen; F T Brederode; R J Moormann; J F Bol
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

10.  A yeast nuclear gene, MRS1, involved in mitochondrial RNA splicing: nucleotide sequence and mutational analysis of two overlapping open reading frames on opposite strands.

Authors:  J Kreike; M Schulze; F Ahne; B F Lang
Journal:  EMBO J       Date:  1987-07       Impact factor: 11.598

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