Literature DB >> 3889840

Does the 'non-coding' strand code?

P M Sharp.   

Abstract

The hypothesis that DNA strands complementary to the coding strand contain in phase coding sequences has been investigated. Statistical analysis of the 50 genes of bacteriophage T7 shows no significant correlation between patterns of codon usage on the coding and non-coding strands. In Bacillus and yeast genes the correlation observed is not different from that expected with random synonymous codon usage, while a high correlation seen in 52 E. coli genes can be explained in terms of an excess of RNY codons. A deficiency of UUA, CUA and UCA codons (complementary to termination) seems to be restricted to the E. coli genes, and may be due to low abundance of the relevant cognate tRNA species. Thus the analysis shows that the non-coding strand has the properties expected of a sequence complementary to a coding strand, with no indications that it encodes, or may have encoded, proteins.

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Year:  1985        PMID: 3889840      PMCID: PMC341079          DOI: 10.1093/nar/13.4.1389

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  Relations between chemical structure and biological activity in peptides.

Authors:  P H Sneath
Journal:  J Theor Biol       Date:  1966-11       Impact factor: 2.691

2.  Darwinian evolution of proteins.

Authors:  B Clarke
Journal:  Science       Date:  1970-05-22       Impact factor: 47.728

3.  An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution.

Authors:  W M Fitch; E Markowitz
Journal:  Biochem Genet       Date:  1970-10       Impact factor: 1.890

4.  Predicting coding function from nucleotide sequence or survival of "fitness" of tRNA.

Authors:  G Pieczenik
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

5.  Evidence for a coding pattern on the non-coding strand of the E. coli genome.

Authors:  C Alff-Steinberger
Journal:  Nucleic Acids Res       Date:  1984-03-12       Impact factor: 16.971

Review 6.  Estimating the total number of nucleotide substitutions since the common ancestor of a pair of homologous genes: comparison of several methods and three beta hemoglobin messenger RNA's.

Authors:  W M Fitch
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

Review 7.  Codon catalog usage and the genome hypothesis.

Authors:  R Grantham; C Gautier; M Gouy; R Mercier; A Pavé
Journal:  Nucleic Acids Res       Date:  1980-01-11       Impact factor: 16.971

8.  Coding capacity of complementary DNA strands.

Authors:  A Casino; M Cipollaro; A M Guerrini; G Mastrocinque; A Spena; V Scarlato
Journal:  Nucleic Acids Res       Date:  1981-03-25       Impact factor: 16.971

9.  Nonrandom patterns of codon usage and of nucleotide substitutions in human alpha- and beta-globin genes: an evolutionary strategy reducing the rate of mutations with drastic effects?

Authors:  G Modiano; G Battistuzzi; A G Motulsky
Journal:  Proc Natl Acad Sci U S A       Date:  1981-02       Impact factor: 11.205

10.  Codon catalog usage is a genome strategy modulated for gene expressivity.

Authors:  R Grantham; C Gautier; M Gouy; M Jacobzone; R Mercier
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

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  3 in total

1.  Origins of genes: "big bang" or continuous creation?

Authors:  P K Keese; A Gibbs
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

2.  The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors:  P M Sharp; W H Li
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

3.  Antisense overlapping open reading frames in genes from bacteria to humans.

Authors:  E Merino; P Balbás; J L Puente; F Bolívar
Journal:  Nucleic Acids Res       Date:  1994-05-25       Impact factor: 16.971

  3 in total

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