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Literature DB >> 6694905

GENAS: a database system for nucleic acid sequence analysis.

S Kuhara, F Matsuo, S Futamura, A Fujita, T Shinohara, T Takagi, Y Sakaki.

Abstract

A database system, named GENAS (GENe Analyzing System), for computer analysis of sequence was constructed using Adbis which is a relational database management system (1). GENAS enables us to retrieve any sequence data from EMBL nucleotide sequence data library (2) and readily to analyze them (if necessary, together with private data) by various application programs in a interactive manner. Analysis of structure of replication origin of replicons was demonstrated using this system.

Mesh：

Substances：
Nucleic Acids

Year: 1984 PMID： 6694905 PMCID： PMC320986 DOI： 10.1093/nar/12.1part1.89

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

9 in total

1. A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors: S B Needleman; C D Wunsch
Journal: J Mol Biol Date: 1970-03 Impact factor: 5.469

2. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors: M Zuker; P Stiegler
Journal: Nucleic Acids Res Date: 1981-01-10 Impact factor: 16.971

3. Nucleic acid sequence database computer system.

Authors: B C Orcutt; D G George; J A Fredrickson; M O Dayhoff
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

4. Los Alamos sequence analysis package for nucleic acids and proteins.

Authors: M I Kanehisa
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

5. Nucleotide sequence of the primary origin of bacteriophage T7 DNA replication: relationship to adjacent genes and regulatory elements.

Authors: H Saito; S Tabor; F Tamanoi; C C Richardson
Journal: Proc Natl Acad Sci U S A Date: 1980-07 Impact factor: 11.205

6. Further procedures for sequence analysis by computer.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1978-03 Impact factor: 16.971

7. Sequences of two kinetoplast DNA minicircles of Tryptanosoma brucei.

Authors: K K Chen; J E Donelson
Journal: Proc Natl Acad Sci U S A Date: 1980-05 Impact factor: 11.205

8. A computer program to search for tRNA genes.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1980-02-25 Impact factor: 16.971

9. Sequence data handling by computer.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1977-11 Impact factor: 16.971

9 in total

18 in total

1. Unusually high conservation of untranslated sequences in cDNAs for Trimeresurus flavoviridis phospholipase A2 isozymes.

Authors: T Ogawa; N Oda; K Nakashima; H Sasaki; M Hattori; Y Sakaki; H Kihara; M Ohno
Journal: Proc Natl Acad Sci U S A Date: 1992-09-15 Impact factor: 11.205

2. A new family of LTR-like sequences abundantly expressed in rat tumors.

Authors: N Suzuki; T Fujiyoshi; Y Maehara; K Takahashi; M Yamamoto; H Endo
Journal: Nucleic Acids Res Date: 1986-12-09 Impact factor: 16.971

3. Structure of a processed gene of mouse cytoplasmic gamma-actin transposed into a BAM5 sequence: insertion has created 13 base-pair direct repeats.

Authors: K Tokunaga; K Yoda; S Sakiyama
Journal: Nucleic Acids Res Date: 1985-05-10 Impact factor: 16.971

4. The L1 family (KpnI family) sequence near the 3' end of human beta-globin gene may have been derived from an active L1 sequence.

Authors: A Fujita; M Hattori; O Takenaka; Y Sakaki
Journal: Nucleic Acids Res Date: 1987-05-26 Impact factor: 16.971