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Literature DB >> 6174934

Los Alamos sequence analysis package for nucleic acids and proteins.

Abstract

An interactive system for computer analysis of nucleic acid and protein sequences has been developed for the Los Alamos DNA Sequence Database. It provides a convenient way to search or verify various sequence features, e.g., restriction enzyme sites, protein coding frames, and properties of coded proteins. Further, the comprehensive analysis package on a large-scale database can be used for comparative studies on sequence and structural homologies in order to find unnoted information stored in nucleic acid sequences.

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Year: 1982 PMID： 6174934 PMCID： PMC326125 DOI： 10.1093/nar/10.1.183

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

14 in total

1. Computer analysis of nucleic acid regulatory sequences.

Authors: L J Korn; C L Queen; M N Wegman
Journal: Proc Natl Acad Sci U S A Date: 1977-10 Impact factor: 11.205

Review 2. The structural basis of the functioning of bacteriorhodopsin: an overview.

Authors: Y A Ovchinnikov; N G Abdulaev; M Y Feigina; A V Kiselev; N A Lobanov
Journal: FEBS Lett Date: 1979-04-15 Impact factor: 4.124

3. Improved estimation of secondary structure in ribonucleic acids.

Authors: I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal: Nat New Biol Date: 1973-11-14

4. Studies on polynucleotides. LXXXII. Yeast phenylalanine transfer ribonucleic acid: partial digestion with ribonuclease T-1 and derivation of the total primary structure.

Authors: U L RajBhandary; S H Chang
Journal: J Biol Chem Date: 1968-02-10 Impact factor: 5.157

5. A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors: S B Needleman; C D Wunsch
Journal: J Mol Biol Date: 1970-03 Impact factor: 5.469

6. Nucleotide sequence of bacteriophage G4 DNA.

Authors: G N Godson; B G Barrell; R Staden; J C Fiddes
Journal: Nature Date: 1978-11-16 Impact factor: 49.962

7. Further procedures for sequence analysis by computer.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1978-03 Impact factor: 16.971

8. Prediction of chain turns in globular proteins on a hydrophobic basis.

Authors: G D Rose
Journal: Nature Date: 1978-04-13 Impact factor: 49.962

9. The nucleotide sequence of bacteriophage phiX174.

Authors: F Sanger; A R Coulson; T Friedmann; G M Air; B G Barrell; N L Brown; J C Fiddes; C A Hutchison; P M Slocombe; M Smith
Journal: J Mol Biol Date: 1978-10-25 Impact factor: 5.469

10. Nucleotide sequence and secondary structure of potato spindle tuber viroid.

Authors: H J Gross; H Domdey; C Lossow; P Jank; M Raba; H Alberty; H L Sänger
Journal: Nature Date: 1978-05-18 Impact factor: 49.962

87 in total

1. Juxtaposition of domains homologous to protein kinases and histidyl-tRNA synthetases in GCN2 protein suggests a mechanism for coupling GCN4 expression to amino acid availability.

Authors: R C Wek; B M Jackson; A G Hinnebusch
Journal: Proc Natl Acad Sci U S A Date: 1989-06 Impact factor: 11.205

2. Nucleotide sequence and transcriptional analysis of activator-regulator proteins for beta-lactamase in Streptomyces cacaoi.

Authors: H Urabe; H Ogawara
Journal: J Bacteriol Date: 1992-05 Impact factor: 3.490

3. A new trimethoprim resistance gene, dhfrX, in the In7 integron of plasmid pDGO100.

Authors: Y Parsons; R M Hall; H W Stokes
Journal: Antimicrob Agents Chemother Date: 1991-11 Impact factor: 5.191

4. Sequence and transcriptional analysis of the gene cluster trnQ-zfpA-psaI-ORF231-petA in pea chloroplasts.

Authors: Y Nagano; R Matsuno; Y Sasaki
Journal: Curr Genet Date: 1991-11 Impact factor: 3.886

5. Evolutionary relationships among the permease proteins of the bacterial phosphoenolpyruvate: sugar phosphotransferase system. Construction of phylogenetic trees and possible relatedness to proteins of eukaryotic mitochondria.

Authors: A Reizer; G M Pao; M H Saier
Journal: J Mol Evol Date: 1991-08 Impact factor: 2.395

6. Molecular cloning of the cDNA for stimulatory GDP/GTP exchange protein for smg p21s (ras p21-like small GTP-binding proteins) and characterization of stimulatory GDP/GTP exchange protein.

Authors: K Kaibuchi; T Mizuno; H Fujioka; T Yamamoto; K Kishi; Y Fukumoto; Y Hori; Y Takai
Journal: Mol Cell Biol Date: 1991-05 Impact factor: 4.272

7. Presence of different O antigen forms in three isolates of one clone of Escherichia coli.

Authors: D Liu; P R Reeves
Journal: Genetics Date: 1994-09 Impact factor: 4.562

8. Relationships among the O-antigen gene clusters of Salmonella enterica groups B, D1, D2, and D3.

Authors: H Curd; D Liu; P R Reeves
Journal: J Bacteriol Date: 1998-02 Impact factor: 3.490

9. Amino acid sequence similarity between GCN3 and GCD2, positive and negative translational regulators of GCN4: evidence for antagonism by competition.

Authors: C J Paddon; E M Hannig; A G Hinnebusch
Journal: Genetics Date: 1989-07 Impact factor: 4.562

10. In vivo and in vitro studies of a copy number mutation of the RepA replication protein of plasmid pSC101.

Authors: G Xia; D Manen; Y Yu; L Caro
Journal: J Bacteriol Date: 1993-07 Impact factor: 3.490