Literature DB >> 6572364

Dynamics of heme iron in crystals of metmyoglobin and deoxymyoglobin.

E R Bauminger, S G Cohen, I Nowik, S Ofer, J Yariv.   

Abstract

The 57Fe gamma-ray resonance absorption spectra have been measured in crystals of metmyoglobin and deoxymyoglobin over a wide range of temperatures. Above a critical temperature common to both proteins (220 K), the dynamics of heme iron display a dramatic change, in that two kinds of thermal fluctuations come into play--a fast fluctuation associated with a steep decrease of the total fluctuation of characteristic time 10(-8) sec, associated with bounded diffusive motion. By using both discrete jump and continuous diffusion models, the latter based on the Brownian motion of an overdamped harmonic oscillator, the essential parameters of the iron motion (mean square displacement and jump frequency or diffusion constant) can be derived as a function of temperature. Thus, for deoxy Mb at 288 K, the mean square displacement for the fast fluctuation is about 6 X 10(-2) A2 and for the diffusive motion is 1.6 X 10(-2) A2; the diffusion constant is 4 X 10(-10) cm2/sec. The diffusive process is associated with an activation energy of about 0.75 kcal/mol. Although the same general kinds of phenomena are observed in crystals of MetMb and deoxy Mb, significant differences in behavior are found, which suggest that the main dynamical phenomenon observed reflects internal large-scale motions of the protein.

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Year:  1983        PMID: 6572364      PMCID: PMC393454          DOI: 10.1073/pnas.80.3.736

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

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Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

2.  Crystallographic studies of the dynamic properties of lysozyme.

Authors:  P J Artymiuk; C C Blake; D E Grace; S J Oatley; D C Phillips; M J Sternberg
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

3.  Structure of myoglobin refined at 2-0 A resolution. I. Crystallographic refinement of metmyoglobin from sperm whale.

Authors:  T Takano
Journal:  J Mol Biol       Date:  1977-03-05       Impact factor: 5.469

4.  Structure of myoglobin refined at 2-0 A resolution. II. Structure of deoxymyoglobin from sperm whale.

Authors:  T Takano
Journal:  J Mol Biol       Date:  1977-03-05       Impact factor: 5.469

5.  Increase in apparent compressibility of cytochrome c upon oxidation.

Authors:  D Eden; J B Matthew; J J Rosa; F M Richards
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

Review 6.  The internal dynamics of globular proteins.

Authors:  M Karplus; J A McCammon
Journal:  CRC Crit Rev Biochem       Date:  1981

7.  Structural changes at the heme induced by freezing hemoglobin.

Authors:  M R Ondrias; D L Rousseau; S R Simon
Journal:  Science       Date:  1981-08-07       Impact factor: 47.728

8.  Dynamics of metmyoglobin crystals investigated by nuclear gamma resonance absorption.

Authors:  F Parak; E N Frolov; R L Mössbauer; V I Goldanskii
Journal:  J Mol Biol       Date:  1981-02-05       Impact factor: 5.469

9.  [Theory of the Mössbauer effect in proteins].

Authors:  K V Shaĭtan; A B Rubin
Journal:  Biofizika       Date:  1980 Sep-Oct

10.  Assignment of the Fe-Nepsilon (His F8) stretching band in the resonance Raman spectra of deoxy myoglobin.

Authors:  T Kitagawa; K Nagai; M Tsubaki
Journal:  FEBS Lett       Date:  1979-08-15       Impact factor: 4.124

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  17 in total

1.  Enzyme activity and dynamics: xylanase activity in the absence of fast anharmonic dynamics.

Authors:  R V Dunn; V Réat; J Finney; M Ferrand; J C Smith; R M Daniel
Journal:  Biochem J       Date:  2000-03-01       Impact factor: 3.857

2.  The effect of low temperatures on enzyme activity.

Authors:  N More; R M Daniel; H H Petach
Journal:  Biochem J       Date:  1995-01-01       Impact factor: 3.857

Review 3.  The denaturation and degradation of stable enzymes at high temperatures.

Authors:  R M Daniel; M Dines; H H Petach
Journal:  Biochem J       Date:  1996-07-01       Impact factor: 3.857

4.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

Review 5.  Structure and dynamics of the water around myoglobin.

Authors:  G N Phillips; B M Pettitt
Journal:  Protein Sci       Date:  1995-02       Impact factor: 6.725

6.  Determination of the second order doppler shift of iron in myoglobin by Mössbauer spectroscopy.

Authors:  L Reinisch; J Heidemeier; F Parak
Journal:  Eur Biophys J       Date:  1985       Impact factor: 1.733

7.  Theory of Mössbauer spectra of proteins fluctuating between conformational substates.

Authors:  W Nadler; K Schulten
Journal:  Proc Natl Acad Sci U S A       Date:  1984-09       Impact factor: 11.205

8.  Mössbauer spectroscopy on nonequilibrium states of myoglobin: a study of r-t relaxation.

Authors:  V E Prusakov; J Steyer; F G Parak
Journal:  Biophys J       Date:  1995-06       Impact factor: 4.033

9.  Structural disorder in proteins. A comparison of myoglobin and erythrocruorin.

Authors:  H Hartmann; W Steigemann; H Reuscher; F Parak
Journal:  Eur Biophys J       Date:  1987       Impact factor: 1.733

10.  Temperature dependence of cytochrome photooxidation and conformational dynamics of Chromatium reaction center complexes.

Authors:  A B Rubin; K V Shaitan; A A Kononenko; S K Chamorovsky
Journal:  Photosynth Res       Date:  1989-12       Impact factor: 3.573

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