Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Recognition of protein coding regions in DNA sequences.

Literature DB >> 7145702

Recognition of protein coding regions in DNA sequences.

Abstract

We give a test for protein coding regions which is based on simple and universal differences between protein-coding and noncoding DNA. The test is simple enough to use without a computer and is completely objective. The test has been thoroughly proven on 400,000 bases of sequence data: it misclassifies 5% of the regions tested and gives an answer of "No Opinion" one fifth of the time. We predict some new coding and noncoding regions in published sequences.

Mesh：

Substances：
Proteins
DNA

Year: 1982 PMID： 7145702 PMCID： PMC320873 DOI： 10.1093/nar/10.17.5303

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

31 in total

1. Nucleotide sequence of an insertion element, IS1.

Authors: H Ohtsubo; E Ohtsubo
Journal: Proc Natl Acad Sci U S A Date: 1978-02 Impact factor: 11.205

2. Sequence of 1019 nucleotides encompassing one of the inverted repeats from the yeast 2 micrometer plasmid.

Authors: J Hindley; G A Phear
Journal: Nucleic Acids Res Date: 1979-09-25 Impact factor: 16.971

3. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors: J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal: Proc Natl Acad Sci U S A Date: 1978-10 Impact factor: 11.205

4. Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli.

Authors: J Brosius; T J Dull; H F Noller
Journal: Proc Natl Acad Sci U S A Date: 1980-01 Impact factor: 11.205

5. Chemical synthesis of a polypeptide predicted from nucleotide sequence allows detection of a new retroviral gene product.

Authors: J G Sutcliffe; T M Shinnick; N Green; F T Liu; H L Niman; R A Lerner
Journal: Nature Date: 1980-10-30 Impact factor: 49.962

6. Nucleotide sequence of the origin of replication of the Escherichia coli K-12 chromosome.

Authors: M Meijer; E Beck; F G Hansen; H E Bergmans; W Messer; K von Meyenburg; H Schaller
Journal: Proc Natl Acad Sci U S A Date: 1979-02 Impact factor: 11.205

7. Nucleotide sequence of Escherichia coli K-12 replication origin.

Authors: K Sugimoto; A Oka; H Sugisaki; M Takanami; A Nishimura; Y Yasuda; Y Hirota
Journal: Proc Natl Acad Sci U S A Date: 1979-02 Impact factor: 11.205

8. Nucleotide sequence of the yeast plasmid.

Authors: J L Hartley; J E Donelson
Journal: Nature Date: 1980-08-28 Impact factor: 49.962

9. The nucleotide sequence of the transforming BglII-H fragment of adenovirus type 7 DNA.

Authors: R Dijkema; B M Dekker; H Van Ormondt
Journal: Gene Date: 1980-04 Impact factor: 3.688

10. Structure of the promoter region for the rrnB gene in Escherichia coli.

Authors: E Csordás-Tóth; I Boros; P Venetianer
Journal: Nucleic Acids Res Date: 1979-12-20 Impact factor: 16.971

257 in total

1. Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium.

Authors: T Kawashima; N Amano; H Koike; S Makino; S Higuchi; Y Kawashima-Ohya; K Watanabe; M Yamazaki; K Kanehori; T Kawamoto; T Nunoshiba; Y Yamamoto; H Aramaki; K Makino; M Suzuki
Journal: Proc Natl Acad Sci U S A Date: 2000-12-19 Impact factor: 11.205

2. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors: J Besemer; A Lomsadze; M Borodovsky
Journal: Nucleic Acids Res Date: 2001-06-15 Impact factor: 16.971

3. An automated annotation tool for genomic DNA sequences using GeneScan and BLAST.

Authors: A M Lynn; C K Jain; K Kosalai; P Barman; N Thakur; H Batra; A Bhattacharya
Journal: J Genet Date: 2001-04 Impact factor: 1.166

4. ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes.

Authors: Feng-Biao Guo; Hong-Yu Ou; Chun-Ting Zhang
Journal: Nucleic Acids Res Date: 2003-03-15 Impact factor: 16.971

5. Nucleotide sequence of the Mycobacterium leprae katG region.

Authors: N Nakata; M Matsuoka; Y Kashiwabara; N Okada; C Sasakawa
Journal: J Bacteriol Date: 1997-05 Impact factor: 3.490

6. In silico pattern-based analysis of the human cytomegalovirus genome.

Authors: Isidore Rigoutsos; Jiri Novotny; Tien Huynh; Stephen T Chin-Bow; Laxmi Parida; Daniel Platt; David Coleman; Thomas Shenk
Journal: J Virol Date: 2003-04 Impact factor: 5.103

7. Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene.

Authors: E A Worthey; Santiago Martinez-Calvillo; Achim Schnaufer; Gautam Aggarwal; Jason Cawthra; Gholam Fazelinia; Chris Fong; Guoliang Fu; Melissa Hassebrock; Greg Hixson; Alasdair C Ivens; Patti Kiser; Felicia Marsolini; Erika Rickel; Erica Rickell; Reza Salavati; Ellen Sisk; Susan M Sunkin; Kenneth D Stuart; Peter J Myler
Journal: Nucleic Acids Res Date: 2003-07-15 Impact factor: 16.971