Literature DB >> 10592208

Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences.

C Lanave1, S Liuni, F Licciulli, M Attimonelli.   

Abstract

The AMmtDB database (http://bio-www.ba.cnr.it:8000/srs6/ ) has been updated by collecting the multi-aligned sequences of Chordata mitochondrial genes coding for proteins and tRNAs. The genes coding for proteins are multi-aligned based on the translated sequences and both the nucleotide and amino acid multi-alignments are provided. AMmtDB data selected through SRS can be viewed and managed using GeneDoc or other programs for the management of multi-aligned data depending on the user's operative system. The multiple alignments have been produced with CLUSTALW and PILEUP programs and then carefully optimized manually.

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Year:  2000        PMID： 10592208      PMCID： PMC102422          DOI： 10.1093/nar/28.1.153

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

1.  CLUSTAL V: improved software for multiple sequence alignment.

Authors:  D G Higgins; A J Bleasby; R Fuchs
Journal:  Comput Appl Biosci       Date:  1992-04

2.  Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences.

Authors:  C Lanave; M Attimonelli; M De Robertis; F Licciulli; S Liuni; E Sbisá; C Saccone
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

3.  MitBASE: a comprehensive and integrated mitochondrial DNA database.

Authors:  M Attimonelli; N Altamura; R Benne; C Boyen; A Brennicke; A Carone; J M Cooper; D D'Elia; A de Montalvo; B de Pinto; M De Robertis; P Golik; J M Grienenberger; V Knoop; C Lanave; J Lazowska; A Lemagnen; B S Malladi; F Memeo; M Monnerot; S Pilbout; A H Schapira; P Sloof; P Slonimski; C Saccone
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

4.  SRS: information retrieval system for molecular biology data banks.

Authors:  T Etzold; A Ulyanov; P Argos
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

5.  SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny.

Authors:  N Galtier; M Gouy; C Gautier
Journal:  Comput Appl Biosci       Date:  1996-12

6.  Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications.

Authors:  E Sbisà; F Tanzariello; A Reyes; G Pesole; C Saccone
Journal:  Gene       Date:  1997-12-31       Impact factor: 3.688

7.  Fast and sensitive multiple sequence alignments on a microcomputer.

Authors:  D G Higgins; P M Sharp
Journal:  Comput Appl Biosci       Date:  1989-04

Review 8.  The evolution of mitochondrial DNA.

Authors:  C Saccone
Journal:  Curr Opin Genet Dev       Date:  1994-12       Impact factor: 5.578

9.  ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

Authors:  M Gouy; C Gautier; M Attimonelli; C Lanave; G di Paola
Journal:  Comput Appl Biosci       Date:  1985-09

10.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971
  10 in total
  3 in total

1.  GOBASE: the organelle genome database.

Authors:  N Shimko; L Liu; B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences.

Authors:  Cecilia Lanave; Flavio Licciulli; Mariateresa De Robertis; Alessandra Marolla; Marcella Attimonelli
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  HmtDB, a human mitochondrial genomic resource based on variability studies supporting population genetics and biomedical research.

Authors:  Marcella Attimonelli; Matteo Accetturo; Monica Santamaria; Daniela Lascaro; Gaetano Scioscia; Graziano Pappadà; Luigi Russo; Luigi Zanchetta; Mila Tommaseo-Ponzetta
Journal:  BMC Bioinformatics       Date:  2005-12-01       Impact factor: 3.169
  3 in total

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