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Literature DB >> 6546422

Computer programs for handling nucleic acid sequences.

Abstract

Programs have been developed that will accurately display restriction enzyme maps, open translational reading frames and the results of specific searches on a high resolution graphics terminal (Retrographics VT640). Many of our earlier programs have been upgraded to allow online access to GENBANK, the NIH data bank of DNA sequences and also to deal with sequences of any length. Progress has also been made in the automation of the DNA assembly programs.

Mesh：

Substances：
DNA

Year: 1984 PMID： 6546422 PMCID： PMC321011 DOI： 10.1093/nar/12.1part1.379

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

7 in total

1. Measurement of DNA length by gel electrophoresis.

Authors: E M Southern
Journal: Anal Biochem Date: 1979-12 Impact factor: 3.365

2. Computer programs for nucleic acid sequence manipulation.

Authors: R M Blumenthal; P J Rice; R J Roberts
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

3. A semi-automated method for the reading of nucleic acid sequencing gels.

Authors: T R Gingeras; P Rice; R J Roberts
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

4. A computer assisted method for the determination of restriction enzyme recognifion sites.

Authors: T R Gingeras; J P MIlazzo; R J Roberts
Journal: Nucleic Acids Res Date: 1978-11 Impact factor: 16.971

5. A new computer method for the storage and manipulation of DNA gel reading data.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1980-08-25 Impact factor: 16.971

6. Computer programs for the assembly of DNA sequences.

Authors: T R Gingeras; J P Milazzo; D Sciaky; R J Roberts
Journal: Nucleic Acids Res Date: 1979-09-25 Impact factor: 16.971

7. Sequence data handling by computer.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1977-11 Impact factor: 16.971

7 in total

16 in total

1. Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12.

Authors: D Dila; E Sutherland; L Moran; B Slatko; E A Raleigh
Journal: J Bacteriol Date: 1990-09 Impact factor: 3.490

2. BfaI, a new MaeI isoschizomer from Bacteroides fragilis, recognizes the sequence 5' C decreases TAG 3'.

Authors: S N Reinecke; R D Morgan
Journal: Nucleic Acids Res Date: 1991-03-11 Impact factor: 16.971

3. Light-harvesting II (B800-B850 complex) structural genes from Rhodopseudomonas capsulata.

Authors: D C Youvan; S Ismail
Journal: Proc Natl Acad Sci U S A Date: 1985-01 Impact factor: 11.205

4. Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts.

Authors: J E Brooks; P D Nathan; D Landry; L A Sznyter; P Waite-Rees; C L Ives; L S Moran; B E Slatko; J S Benner
Journal: Nucleic Acids Res Date: 1991-02-25 Impact factor: 16.971

Computer programs for handling nucleic acid sequences.

1. Measurement of DNA length by gel electrophoresis.

2. Computer programs for nucleic acid sequence manipulation.

3. A semi-automated method for the reading of nucleic acid sequencing gels.

4. A computer assisted method for the determination of restriction enzyme recognifion sites.

5. A new computer method for the storage and manipulation of DNA gel reading data.

6. Computer programs for the assembly of DNA sequences.

7. Sequence data handling by computer.

1. Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12.

2. BfaI, a new MaeI isoschizomer from Bacteroides fragilis, recognizes the sequence 5' C decreases TAG 3'.

3. Light-harvesting II (B800-B850 complex) structural genes from Rhodopseudomonas capsulata.

4. Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts.

5. Cloning and characterization of the HpaII methylase gene.

6. Cloning the BamHI restriction modification system.

7. Nucleotide sequence of the DdeI restriction-modification system and characterization of the methylase protein.

8. Cloning, sequencing and expression of the Taq I restriction-modification system.

9. Nucleotide sequence of the BsuRI restriction-modification system.

10. A comprehensive package for DNA sequence analysis in FORTRAN IV for the PDP-11.