Literature DB >> 6391543

Variation of transition-state structure as a function of the nucleotide in reactions catalyzed by dehydrogenases. 1. Liver alcohol dehydrogenase with benzyl alcohol and yeast aldehyde dehydrogenase with benzaldehyde.

M Scharschmidt, M A Fisher, W W Cleland.   

Abstract

Primary intrinsic deuterium and 13C isotope effects have been determined for liver (LADH) and yeast (YADH) alcohol dehydrogenases with benzyl alcohol as substrate and for yeast aldehyde dehydrogenase (ALDH) with benzaldehyde as substrate. These values have also been determined for LADH as a function of changing nucleotide substrate. As the redox potential of the nucleotide changes from -0.320 V with NAD to -0.258 V with acetylpyridine-NAD, the product of primary and secondary deuterium isotope effects rises from 4 toward 6.5, while the primary 13C isotope effect drops from 1.025 to 1.012, suggesting a trend from a late transition state with NAD to one that is more symmetrical. The values of Dk (again the product of primary and secondary isotope effects) and 13k for YADH with NAD are 7 and 1.023, suggesting for this very slow reaction a more stretched, and thus symmetrical, transition state. With ALDH and NAD, the primary 13C isotope effect on the hydride transfer step lies in the range 1.3-1.6%, and the alpha-secondary deuterium isotope effect on the same step is at least 1.22, but 13C isotope effects on formation of the thiohemiacetal intermediate and on the addition of water to the thio ester intermediate are less than 1%. On the basis of the relatively large 13C isotope effects, we conclude that carbon motion is involved in the hydride transfer steps of dehydrogenase reactions.

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Year:  1984        PMID: 6391543     DOI: 10.1021/bi00318a015

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

Review 1.  Summarizing lecture: factors influencing enzymatic H-transfers, analysis of nuclear tunnelling isotope effects and thermodynamic versus specific effects.

Authors:  R A Marcus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

2.  Experimental evidence for a hydride transfer mechanism in plant glycolate oxidase catalysis.

Authors:  Younès Dellero; Caroline Mauve; Edouard Boex-Fontvieille; Valérie Flesch; Mathieu Jossier; Guillaume Tcherkez; Michael Hodges
Journal:  J Biol Chem       Date:  2014-11-21       Impact factor: 5.157

3.  Nonstatistical 13C distribution during carbon transfer from glucose to ethanol during fermentation is determined by the catabolic pathway exploited.

Authors:  Kevin Bayle; Serge Akoka; Gérald S Remaud; Richard J Robins
Journal:  J Biol Chem       Date:  2014-12-23       Impact factor: 5.157

4.  13C kinetic isotope effects on the reaction of a flavin amine oxidase determined from whole molecule isotope effects.

Authors:  José R Tormos; Marina B Suarez; Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2016-11-01       Impact factor: 4.013

5.  Effects of high pressure on solvent isotope effects of yeast alcohol dehydrogenase.

Authors:  D B Northrop; Y K Cho
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

6.  Mechanistic studies of 1-aminocyclopropane-1-carboxylate deaminase: characterization of an unusual pyridoxal 5'-phosphate-dependent reaction.

Authors:  Christopher J Thibodeaux; Hung-Wen Liu
Journal:  Biochemistry       Date:  2011-02-03       Impact factor: 3.162

7.  Benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase II from Acinetobacter calcoaceticus. Purification and preliminary characterization.

Authors:  R W MacKintosh; C A Fewson
Journal:  Biochem J       Date:  1988-03-15       Impact factor: 3.857

8.  Yeast alcohol dehydrogenase structure and catalysis.

Authors:  Savarimuthu Baskar Raj; S Ramaswamy; Bryce V Plapp
Journal:  Biochemistry       Date:  2014-09-03       Impact factor: 3.162

  8 in total

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