Literature DB >> 16873131

Summarizing lecture: factors influencing enzymatic H-transfers, analysis of nuclear tunnelling isotope effects and thermodynamic versus specific effects.

R A Marcus1.   

Abstract

In the articles in this Discussion, a wide variety of topics are treated, including reorganization energy, initially introduced for electron transfers ('environmentally assisted tunnelling'), nuclear tunnelling, H/D and 12C/13C kinetic isotope effects (KIEs), the effect of changes of distal and nearby amino acid residues using site-directed mutagenesis, and dynamics versus statistical effects. A coordinate-free form of semi-classical theory is used to examine topics on data such as tunnelling versus 'over-the-barrier' paths and temperature and pressure effects on KIEs. The multidimensional semi-classical theory includes classically allowed and classically forbidden transitions. More generally, we address the question of relating kinetic to thermodynamic factors, as in the electron transfer field, so learning about specific versus thermodynamic effects in enzyme catalysis and KIEs.

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Year:  2006        PMID: 16873131      PMCID: PMC1647317          DOI: 10.1098/rstb.2006.1873

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  8 in total

1.  Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

Authors:  Michael J Knapp; Keith Rickert; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

2.  Dynamics of an enzymatic substitution reaction in haloalkane dehalogenase.

Authors:  Kwangho Nam; Xavier Prat-Resina; Mireia Garcia-Viloca; Lakshmi S Devi-Kesavan; Jiali Gao
Journal:  J Am Chem Soc       Date:  2004-02-11       Impact factor: 15.419

3.  Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase.

Authors:  Zhao-Xun Liang; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

4.  Single particle versus ensemble average: from power-law intermittency of a single quantum dot to quasistretched exponential fluorescence decay of an ensemble.

Authors:  Jau Tang; R A Marcus
Journal:  J Chem Phys       Date:  2005-11-22       Impact factor: 3.488

5.  Large kinetic isotope effects in enzymatic proton transfer and the role of substrate oscillations.

Authors:  D Antoniou; S D Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

6.  Determination of a large reorganization energy barrier for hydride abstraction by glucose oxidase.

Authors:  David W Brinkley; Justine P Roth
Journal:  J Am Chem Soc       Date:  2005-11-16       Impact factor: 15.419

7.  Correlated motion and the effect of distal mutations in dihydrofolate reductase.

Authors:  Thomas H Rod; Jennifer L Radkiewicz; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-19       Impact factor: 11.205

8.  Variation of transition-state structure as a function of the nucleotide in reactions catalyzed by dehydrogenases. 1. Liver alcohol dehydrogenase with benzyl alcohol and yeast aldehyde dehydrogenase with benzaldehyde.

Authors:  M Scharschmidt; M A Fisher; W W Cleland
Journal:  Biochemistry       Date:  1984-11-06       Impact factor: 3.162

  8 in total
  5 in total

1.  Contribution of flavin covalent linkage with histidine 99 to the reaction catalyzed by choline oxidase.

Authors:  Osbourne Quaye; Sharonda Cowins; Giovanni Gadda
Journal:  J Biol Chem       Date:  2009-04-27       Impact factor: 5.157

2.  Hydrogen atom transfer reactions of a ruthenium imidazole complex: hydrogen tunneling and the applicability of the Marcus cross relation.

Authors:  Adam Wu; James M Mayer
Journal:  J Am Chem Soc       Date:  2008-10-09       Impact factor: 15.419

3.  Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase.

Authors:  Jiang Li; Zheyun Liu; Chuang Tan; Xunmin Guo; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

4.  Concerted versus stepwise mechanism in thymidylate synthase.

Authors:  Zahidul Islam; Timothy S Strutzenberg; Ilya Gurevic; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2014-07-01       Impact factor: 15.419

5.  Solvent and Temperature Probes of the Long-Range Electron-Transfer Step in Tyramine β-Monooxygenase: Demonstration of a Long-Range Proton-Coupled Electron-Transfer Mechanism.

Authors:  Hui Zhu; Monika Sommerhalter; Andy K L Nguy; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2015-04-28       Impact factor: 15.419

  5 in total

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