Literature DB >> 10969022

Effects of high pressure on solvent isotope effects of yeast alcohol dehydrogenase.

D B Northrop1, Y K Cho.   

Abstract

The effect of pressure on the capture of a substrate alcohol by yeast alcohol dehydrogenase is biphasic. Solvent isotope effects accompany both phases and are expressed differently at different pressures. These differences allow the extraction of an inverse intrinsic kinetic solvent isotope effect of 1.1 (i.e., (D(2(O)))V/K = 0.9) accompanying hydride transfer and an inverse equilibrium solvent isotope effect of 2.6 (i.e., (D(2(O)))K(s) = 0.4) accompanying the binding of nucleotide, NAD(+). The value of the kinetic effect is consistent with a reactant-state E-NAD(+)-Zn-OH(2) having a fractionation factor of phi approximately 0.5 for the zinc-bound water in conjunction with a transition-state proton exiting a low-barrier hydrogen bond with a fractionation factor between 0.6 and 0.9. The value of the equilibrium effect is consistent with restrictions of torsional motions of multiple hydrogens of the enzyme protein during the conformational change that accompanies the binding of NAD(+). The absence of significant commitments to catalysis accompanying the kinetic solvent isotope effect means that this portion of the proton transfer occurs in the same reactive step as hydride transfer in a concerted chemical mechanism. The success of this analysis suggests that future measurements of solvent isotope effects as a function of pressure, in the presence of moderate commitments to catalysis, may yield precise estimates of intrinsic solvent isotope effects that are not fully expressed on capture at atmospheric pressure.

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Year:  2000        PMID: 10969022      PMCID: PMC1301054          DOI: 10.1016/S0006-3495(00)76412-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

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Authors:  D B Northrop; Y K Cho
Journal:  Biochemistry       Date:  2000-03-07       Impact factor: 3.162

2.  Hydrostatic pressure induces conformational and catalytic changes on two alcohol dehydrogenases but no oligomeric dissociation.

Authors:  S Dallet; M D Legoy
Journal:  Biochim Biophys Acta       Date:  1996-05-02

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Authors:  J D Shore; H Gutfreund; R L Brooks; D Santiago; P Santiago
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4.  Kinetics of iso mechanisms.

Authors:  K L Rebholz; D B Northrop
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5.  Hydrostatic and osmotic pressure as tools to study macromolecular recognition.

Authors:  C R Robinson; S G Sligar
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

6.  Measured change in protein solvation with substrate binding and turnover.

Authors:  R P Rand; N L Fuller; P Butko; G Francis; P Nicholls
Journal:  Biochemistry       Date:  1993-06-15       Impact factor: 3.162

7.  Structures of horse liver alcohol dehydrogenase complexed with NAD+ and substituted benzyl alcohols.

Authors:  S Ramaswamy; H Eklund; B V Plapp
Journal:  Biochemistry       Date:  1994-05-03       Impact factor: 3.162

8.  The rate of formation of transition-state analogues in the active site of adenosine deaminase is encounter-controlled: implications for the mechanism.

Authors:  L C Kurz; L Moix; M C Riley; C Frieden
Journal:  Biochemistry       Date:  1992-01-14       Impact factor: 3.162

9.  Solvent isotope effects on the onset of inhibition of porcine pepsin by pepstatin.

Authors:  Y K Cho; K L Rebholz; D B Northrop
Journal:  Biochemistry       Date:  1994-08-16       Impact factor: 3.162

10.  Catalytic mechanism of yeast adenosine 5'-monophosphate deaminase. Zinc content, substrate specificity, pH studies, and solvent isotope effects.

Authors:  D J Merkler; V L Schramm
Journal:  Biochemistry       Date:  1993-06-08       Impact factor: 3.162

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  6 in total

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3.  Unusual origins of isotope effects in enzyme-catalysed reactions.

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

4.  The partial substrate dethiaacetyl-coenzyme A mimics all critical carbon acid reactions in the condensation half-reaction catalyzed by Thermoplasma acidophilum citrate synthase.

Authors:  Linda C Kurz; Charles Z Constantine; Hong Jiang; T Joseph Kappock
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

5.  Catalytic mechanism of Zn2+-dependent polyol dehydrogenases: kinetic comparison of sheep liver sorbitol dehydrogenase with wild-type and Glu154-->Cys forms of yeast xylitol dehydrogenase.

Authors:  Mario Klimacek; Heidemarie Hellmer; Bernd Nidetzky
Journal:  Biochem J       Date:  2007-06-15       Impact factor: 3.857

6.  Yeast alcohol dehydrogenase structure and catalysis.

Authors:  Savarimuthu Baskar Raj; S Ramaswamy; Bryce V Plapp
Journal:  Biochemistry       Date:  2014-09-03       Impact factor: 3.162

  6 in total

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