Literature DB >> 1712103

Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA.

S F Elena1, J Dopazo, R Flores, T O Diener, A Moya.   

Abstract

We report a phylogenetic study of viroids, some plant satellite RNAs, and the viroidlike domain of human hepatitis delta virus RNA. Our results support a monophyletic origin of these RNAs and are consistent with the hypothesis that they may be "living fossils" of a precellular RNA world. Moreover, the viroidlike domain of human hepatitis delta virus RNA appears closely related to the viroidlike satellite RNAs of plants, with which it shares some structural and functional properties. On the basis of our phylogenetic analysis, we propose a taxonomic classification of these RNAs.

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Year:  1991        PMID： 1712103      PMCID： PMC51931          DOI： 10.1073/pnas.88.13.5631

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  33 in total

1.  Autolytic processing of dimeric plant virus satellite RNA.

Authors:  G A Prody; J T Bakos; J M Buzayan; I R Schneider; G Bruening
Journal:  Science       Date:  1986-03-28       Impact factor: 47.728

Review 2.  On the origin of RNA splicing and introns.

Authors:  P A Sharp
Journal:  Cell       Date:  1985-09       Impact factor: 41.582

3.  Structure and replication of the genome of the hepatitis delta virus.

Authors:  P J Chen; G Kalpana; J Goldberg; W Mason; B Werner; J Gerin; J Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  1986-11       Impact factor: 11.205

4.  A model for the RNA-catalyzed replication of RNA.

Authors:  T R Cech
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

5.  Circular RNAs: relics of precellular evolution?

Authors:  T O Diener
Journal:  Proc Natl Acad Sci U S A       Date:  1989-12       Impact factor: 11.205

6.  Fast and sensitive multiple sequence alignments on a microcomputer.

Authors:  D G Higgins; P M Sharp
Journal:  Comput Appl Biosci       Date:  1989-04

7.  Nucleotide sequence and proposed secondary structure of Columnea latent viroid: a natural mosaic of viroid sequences.

Authors:  R Hammond; D R Smith; T O Diener
Journal:  Nucleic Acids Res       Date:  1989-12-11       Impact factor: 16.971

8.  Australian grapevine viroid--evidence for extensive recombination between viroids.

Authors:  M A Rezaian
Journal:  Nucleic Acids Res       Date:  1990-04-11       Impact factor: 16.971

9.  Nucleotide sequence and secondary structure of potato spindle tuber viroid.

Authors:  H J Gross; H Domdey; C Lossow; P Jank; M Raba; H Alberty; H L Sänger
Journal:  Nature       Date:  1978-05-18       Impact factor: 49.962

10.  The molecular structure of hop latent viroid (HLV), a new viroid occurring worldwide in hops.

Authors:  H Puchta; K Ramm; H L Sänger
Journal:  Nucleic Acids Res       Date:  1988-05-25       Impact factor: 16.971
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  33 in total

1.  A new structural motif in the left terminal domain of large viroids identified by covariation analysis.

Authors:  Frank-Ulrich Gast
Journal:  Virus Genes       Date:  2003-01       Impact factor: 2.332

2.  The strands of both polarities of a small circular RNA from carnation self-cleave in vitro through alternative double- and single-hammerhead structures.

Authors:  C Hernández; J A Daròs; S F Elena; A Moya; R Flores
Journal:  Nucleic Acids Res       Date:  1992-12-11       Impact factor: 16.971

3.  Stable and noncompetitive RNA internal control for routine clinical diagnostic reverse transcription-PCR.

Authors:  Kate E Dingle; Derrick Crook; Katie Jeffery
Journal:  J Clin Microbiol       Date:  2004-03       Impact factor: 5.948

4.  Chrysanthemum chlorotic mottle viroid: unusual structural properties of a subgroup of self-cleaving viroids with hammerhead ribozymes.

Authors:  B Navarro; R Flores
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-14       Impact factor: 11.205

Review 5.  RNA replication without RNA-dependent RNA polymerase: surprises from hepatitis delta virus.

Authors:  Michael M C Lai
Journal:  J Virol       Date:  2005-07       Impact factor: 5.103

Review 6.  Origin and evolution of viroids and viroid-like satellite RNAs.

Authors:  T O Diener
Journal:  Virus Genes       Date:  1995       Impact factor: 2.332

7.  Compilation and analysis of viroid and viroid-like RNA sequences.

Authors:  F Bussière; D Lafontaine; J P Perreault
Journal:  Nucleic Acids Res       Date:  1996-05-15       Impact factor: 16.971

8.  Prominent polypurine and polypyrimidine tracts in plant viroids and in RNA of the human hepatitis delta agent.

Authors:  A D Branch; S E Lee; O D Neel; H D Robertson
Journal:  Nucleic Acids Res       Date:  1993-07-25       Impact factor: 16.971

9.  The RNA of both polarities of the peach latent mosaic viroid self-cleaves in vitro solely by single hammerhead structures.

Authors:  D Beaudry; F Busière; F Lareau; C Lessard; J P Perreault
Journal:  Nucleic Acids Res       Date:  1995-03-11       Impact factor: 16.971

10.  A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication.

Authors:  K S Jeng; A Daniel; M M Lai
Journal:  J Virol       Date:  1996-04       Impact factor: 5.103
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