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Literature DB >> 6198620

A computer program package for storing and retrieving DNA/RNA and protein sequence data.

Abstract

A computer program package has been made available which contains five compound programs written in FORTRAN 10 (for DECsystem-10). Program DATBAS is for storing and improving DNA sequence data, especially those obtained by the sequencing method using M13 phages. Programs NUCDAT and PROTEN are for analyzing DNA/RNA and protein sequence data, respectively. They contain various options to help users in analyzing DNA/RNA and protein sequence data. With program NUCDAT, it is also possible to get access to the EMBO Nucleotide Data Library. This can be achieved by running program COPY to create two data files from the library. Program LITRAT enables users to prepare a scientific literature file convenient for writing scientific articles, and program STRAIN for storing information concerning bacterial and/or plasmid strains.

Mesh：

Substances：
RNA
DNA

Year: 1984 PMID： 6198620 PMCID： PMC320987 DOI： 10.1093/nar/12.1part1.101

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

8 in total

1. A strategy of DNA sequencing employing computer programs.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1979-06-11 Impact factor: 16.971

2. Computer analysis of nucleic acids and proteins.

Authors: C L Queen; L J Korn
Journal: Methods Enzymol Date: 1980 Impact factor: 1.600

3. Computer programs to analyze DNA and amino acid sequence data.

Authors: K Isono
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

4. The DNA sequence of the gene rpsA of Escherichia coli coding for ribosomal protein S1.

Authors: J Schnier; K Isono
Journal: Nucleic Acids Res Date: 1982-03-25 Impact factor: 16.971

5. STRAIN, a computer program for storing information about bacterial strains.

Authors: K Isono
Journal: Mol Gen Genet Date: 1982

Review 6. E. coli RNA polymerase interacts homologously with two different promoters.

Authors: U Siebenlist; R B Simpson; W Gilbert
Journal: Cell Date: 1980-06 Impact factor: 41.582

7. A new computer method for the storage and manipulation of DNA gel reading data.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1980-08-25 Impact factor: 16.971

8. Sequence data handling by computer.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1977-11 Impact factor: 16.971

8 in total

17 in total

1. Cloning, characterization, and physical location of the rplY gene which encodes ribosomal protein L25 in Escherichia coli K12.

Authors: Y Uemura; S Isono; K Isono
Journal: Mol Gen Genet Date: 1991-04

2. Correlation between the rate of productive transcription initiation and the strand-melting property of Escherichia coli promoters.

Authors: H Tachibana; A Ishihama
Journal: Nucleic Acids Res Date: 1985-12-20 Impact factor: 16.971

3. Cloning and nucleotide sequencing of the genes rimI and rimJ which encode enzymes acetylating ribosomal proteins S18 and S5 of Escherichia coli K12.

Authors: A Yoshikawa; S Isono; A Sheback; K Isono
Journal: Mol Gen Genet Date: 1987-10

4. Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12.

Authors: W K Kang; T Icho; S Isono; M Kitakawa; K Isono
Journal: Mol Gen Genet Date: 1989-06

5. Cloning and molecular characterization of the gene rimL which encodes an enzyme acetylating ribosomal protein L12 of Escherichia coli K12.

Authors: S Tanaka; Y Matsushita; A Yoshikawa; K Isono
Journal: Mol Gen Genet Date: 1989-06

6. The nucleotide sequence of an Escherichia coli chromosomal region containing the genes for ribosomal proteins S6, S18, L9 and an open reading frame.

Authors: J Schnier; M Kitakawa; K Isono
Journal: Mol Gen Genet Date: 1986-07

7. Regular distribution of length heterogeneities within non-transcribed spacer regions of cloned and genomic rDNA of Saccharomyces cerevisiae.

Authors: R Jemtland; E Maehlum; O S Gabrielsen; T B Oyen
Journal: Nucleic Acids Res Date: 1986-07-11 Impact factor: 16.971

8. Unstable mutations caused by regional tandem multiplications in the gene for ribosomal protein S4 show thermosensitivity in Escherichia coli.

Authors: J Schnier; S Isono; A G Cumberlidge; K Isono
Journal: Mol Gen Genet Date: 1985

9. Cloning and analysis of the nuclear gene for YmL33, a protein of the large subunit of the mitochondrial ribosome in Saccharomyces cerevisiae.

Authors: W Kang; Y Matsushita; L Grohmann; H R Graack; M Kitakawa; K Isono
Journal: J Bacteriol Date: 1991-07 Impact factor: 3.490

10. Comparative studies on the structural gene for the ribosomal protein S1 in ten bacterial species.

Authors: J Schnier; G Faist
Journal: Mol Gen Genet Date: 1985