| Literature DB >> 35681603 |
Sara Merkaj1,2, Ryan C Bahar1, Tal Zeevi1, MingDe Lin1,3, Ichiro Ikuta1, Khaled Bousabarah4, Gabriel I Cassinelli Petersen1, Lawrence Staib1, Seyedmehdi Payabvash1, John T Mongan5, Soonmee Cha5, Mariam S Aboian1.
Abstract
Technological innovation has enabled the development of machine learning (ML) tools that aim to improve the practice of radiologists. In the last decade, ML applications to neuro-oncology have expanded significantly, with the pre-operative prediction of glioma grade using medical imaging as a specific area of interest. We introduce the subject of ML models for glioma grade prediction by remarking upon the models reported in the literature as well as by describing their characteristic developmental workflow and widely used classifier algorithms. The challenges facing these models-including data sources, external validation, and glioma grade classification methods -are highlighted. We also discuss the quality of how these models are reported, explore the present and future of reporting guidelines and risk of bias tools, and provide suggestions for the reporting of prospective works. Finally, this review offers insights into next steps that the field of ML glioma grade prediction can take to facilitate clinical implementation.Entities:
Keywords: artificial intelligence; deep learning; glioma; machine learning; reporting quality
Year: 2022 PMID: 35681603 PMCID: PMC9179416 DOI: 10.3390/cancers14112623
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.575
Overview of commonly extracted feature types in studies developing ML prediction models.
| Feature Type | Explanation |
|---|---|
| Clinical | Describe patient demographics, e.g., gender and age. |
| Deep learning extracted | Derived from pre-trained deep neural networks. |
| First-order | Create a three-dimensional (3D) histogram out of tumor volume characteristics, from which mean, median, range, skewness, kurtosis, etc., can be calculated [ |
| Higher-order | Identify repetitiveness in image patterns, suppress noise, or highlight details [ |
| Qualitative | Describe visible tumor characteristics on imaging using controlled vocabulary, e.g., VASARI features (tumor location, side of lesion center, enhancement quality, etc.). |
| Second-order | Classify texture characteristics, e.g., contrast, correlation, dissimilarity, maximum probability, grey level run length features, etc. [ |
| Shape and size | Describe the statistical inter-relationships between neighboring voxels, e.g., total volume or surface area, surface-to-volume ratio, tumor compactness, sphericity, etc. [ |
Figure 1Characteristic workflow for developing ML glioma grade prediction models. VASARI = Visually AcceSAble Rembrandt Images, AUC = area under the curve receiver operating characteristic, CNN = convolutional neural network, ML = machine learning, NPV = negative predictive value, PPV = positive predictive value, and SVM = support vector machine.
Figure 2Challenges for clinical implementation of ML glioma grade prediction models. ML = machine learning. WHO = World Health Organization.
Overview of major reporting guidelines and bias assessment tools for diagnostic and prognostic studies.
| Guideline/Tool | Full Name | Year Published | Articles Targeted | Purpose | Specific to ML? |
|---|---|---|---|---|---|
| QUADAS-2 4 | Quality Assessment of Diagnostic Accuracy Studies | 2011 (original QUADAS 4: 2003) | Diagnostic accuracy studies | Evaluates study risk of bias and applicability | No; QUADAS-AI 4 is in development |
| TRIPOD 6 | Transparent Reporting of a multivariable prediction model for Individual Prognosis Or Diagnosis | 2015 | Studies developing, validating, or updating a diagnostic or prognostic prediction model | Provides a set of recommendations for study reporting | No; TRIPOD-AI 6 is in development |
| RQS 5 | Radiomics quality score | 2017 | Radiomic studies | Assesses study quality (emulating TRIPOD 6) | No |
| PROBAST 3 | Prediction model Risk Of Bias ASsessment Tool | 2019 | Studies developing, validating, or updating a diagnostic or prognostic prediction model | Evaluates study risk of bias and applicability | No; PROBAST-AI 3 is in development |
| CLAIM 2 | Checklist for AI 1 in Medical Imaging | 2020 | AI 1 studies in medical imaging | Guides authors in presenting (and aids reviewers in evaluating) their research | Yes |
1 AI = artificial intelligence, 2 CLAIM = Checklist for AI in Medical Imaging, 3 PROBAST = Prediction model Risk Of Bias ASsessment Tool, 4 QUADAS-2 = Quality Assessment of Diagnostic Accuracy Studies, 5 RQS = radiomics quality score, and 6 TRIPOD = Transparent Reporting of a multivariable prediction model for Individual Prognosis or Diagnosis.
Figure 3Future directions for clinical implementation of ML glioma grade prediction models, ML = machine learning.