Literature DB >> 31231720

Multi-Institutional Deep Learning Modeling Without Sharing Patient Data: A Feasibility Study on Brain Tumor Segmentation.

Micah J Sheller1, G Anthony Reina1, Brandon Edwards1, Jason Martin1, Spyridon Bakas2.   

Abstract

Deep learning models for semantic segmentation of images require large amounts of data. In the medical imaging domain, acquiring sufficient data is a significant challenge. Labeling medical image data requires expert knowledge. Collaboration between institutions could address this challenge, but sharing medical data to a centralized location faces various legal, privacy, technical, and data-ownership challenges, especially among international institutions. In this study, we introduce the first use of federated learning for multi-institutional collaboration, enabling deep learning modeling without sharing patient data. Our quantitative results demonstrate that the performance of federated semantic segmentation models (Dice=0.852) on multimodal brain scans is similar to that of models trained by sharing data (Dice=0.862). We compare federated learning with two alternative collaborative learning methods and find that they fail to match the performance of federated learning.

Entities:  

Keywords:  BraTS; Deep Learning; Federated; Glioma; Incremental; Machine Learning; Segmentation

Year:  2019        PMID: 31231720      PMCID: PMC6589345          DOI: 10.1007/978-3-030-11723-8_9

Source DB:  PubMed          Journal:  Brainlesion


  11 in total

1.  Catastrophic forgetting in connectionist networks.

Authors: 
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Authors:  James Kirkpatrick; Razvan Pascanu; Neil Rabinowitz; Joel Veness; Guillaume Desjardins; Andrei A Rusu; Kieran Milan; John Quan; Tiago Ramalho; Agnieszka Grabska-Barwinska; Demis Hassabis; Claudia Clopath; Dharshan Kumaran; Raia Hadsell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-14       Impact factor: 11.205

3.  In Vivo Detection of EGFRvIII in Glioblastoma via Perfusion Magnetic Resonance Imaging Signature Consistent with Deep Peritumoral Infiltration: The φ-Index.

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Journal:  Clin Cancer Res       Date:  2017-04-20       Impact factor: 12.531

4.  Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques.

Authors:  Luke Macyszyn; Hamed Akbari; Jared M Pisapia; Xiao Da; Mark Attiah; Vadim Pigrish; Yingtao Bi; Sharmistha Pal; Ramana V Davuluri; Laura Roccograndi; Nadia Dahmane; Maria Martinez-Lage; George Biros; Ronald L Wolf; Michel Bilello; Donald M O'Rourke; Christos Davatzikos
Journal:  Neuro Oncol       Date:  2015-07-16       Impact factor: 12.300

5.  Residual Deep Convolutional Neural Network Predicts MGMT Methylation Status.

Authors:  Panagiotis Korfiatis; Timothy L Kline; Daniel H Lachance; Ian F Parney; Jan C Buckner; Bradley J Erickson
Journal:  J Digit Imaging       Date:  2017-10       Impact factor: 4.056

6.  Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features.

Authors:  Spyridon Bakas; Hamed Akbari; Aristeidis Sotiras; Michel Bilello; Martin Rozycki; Justin S Kirby; John B Freymann; Keyvan Farahani; Christos Davatzikos
Journal:  Sci Data       Date:  2017-09-05       Impact factor: 6.444

7.  A deep learning model integrating FCNNs and CRFs for brain tumor segmentation.

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Journal:  Med Image Anal       Date:  2017-10-05       Impact factor: 8.545

8.  Imaging Surrogates of Infiltration Obtained Via Multiparametric Imaging Pattern Analysis Predict Subsequent Location of Recurrence of Glioblastoma.

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Journal:  Neurosurgery       Date:  2016-04       Impact factor: 4.654

Review 9.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

10.  Distributed deep learning networks among institutions for medical imaging.

Authors:  Ken Chang; Niranjan Balachandar; Carson Lam; Darvin Yi; James Brown; Andrew Beers; Bruce Rosen; Daniel L Rubin; Jayashree Kalpathy-Cramer
Journal:  J Am Med Inform Assoc       Date:  2018-08-01       Impact factor: 7.942

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  42 in total

1.  A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop.

Authors:  Curtis P Langlotz; Bibb Allen; Bradley J Erickson; Jayashree Kalpathy-Cramer; Keith Bigelow; Tessa S Cook; Adam E Flanders; Matthew P Lungren; David S Mendelson; Jeffrey D Rudie; Ge Wang; Krishna Kandarpa
Journal:  Radiology       Date:  2019-04-16       Impact factor: 11.105

2.  CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer Assisted Interventions.

Authors:  Tom Vercauteren; Mathias Unberath; Nicolas Padoy; Nassir Navab
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-10-23       Impact factor: 10.961

3.  Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology.

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Review 4.  AI-based computer-aided diagnosis (AI-CAD): the latest review to read first.

Authors:  Hiroshi Fujita
Journal:  Radiol Phys Technol       Date:  2020-01-02

5.  Generalization of deep learning models for ultra-low-count amyloid PET/MRI using transfer learning.

Authors:  Kevin T Chen; Matti Schürer; Jiahong Ouyang; Mary Ellen I Koran; Guido Davidzon; Elizabeth Mormino; Solveig Tiepolt; Karl-Titus Hoffmann; Osama Sabri; Greg Zaharchuk; Henryk Barthel
Journal:  Eur J Nucl Med Mol Imaging       Date:  2020-06-13       Impact factor: 9.236

Review 6.  Radiomics: from qualitative to quantitative imaging.

Authors:  William Rogers; Sithin Thulasi Seetha; Turkey A G Refaee; Relinde I Y Lieverse; Renée W Y Granzier; Abdalla Ibrahim; Simon A Keek; Sebastian Sanduleanu; Sergey P Primakov; Manon P L Beuque; Damiënne Marcus; Alexander M A van der Wiel; Fadila Zerka; Cary J G Oberije; Janita E van Timmeren; Henry C Woodruff; Philippe Lambin
Journal:  Br J Radiol       Date:  2020-02-26       Impact factor: 3.039

Review 7.  Imaging signatures of glioblastoma molecular characteristics: A radiogenomics review.

Authors:  Anahita Fathi Kazerooni; Spyridon Bakas; Hamidreza Saligheh Rad; Christos Davatzikos
Journal:  J Magn Reson Imaging       Date:  2019-08-27       Impact factor: 4.813

Review 8.  Shifting machine learning for healthcare from development to deployment and from models to data.

Authors:  Angela Zhang; Lei Xing; James Zou; Joseph C Wu
Journal:  Nat Biomed Eng       Date:  2022-07-04       Impact factor: 25.671

9.  Multi-site fMRI analysis using privacy-preserving federated learning and domain adaptation: ABIDE results.

Authors:  Xiaoxiao Li; Yufeng Gu; Nicha Dvornek; Lawrence H Staib; Pamela Ventola; James S Duncan
Journal:  Med Image Anal       Date:  2020-07-02       Impact factor: 8.545

Review 10.  Artificial intelligence and machine learning for medical imaging: A technology review.

Authors:  Ana Barragán-Montero; Umair Javaid; Gilmer Valdés; Dan Nguyen; Paul Desbordes; Benoit Macq; Siri Willems; Liesbeth Vandewinckele; Mats Holmström; Fredrik Löfman; Steven Michiels; Kevin Souris; Edmond Sterpin; John A Lee
Journal:  Phys Med       Date:  2021-05-09       Impact factor: 2.685

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