Literature DB >> 35601688

An approximate expectation-maximization for two-dimensional multi-target detection.

Shay Kreymer1, Amit Singer2, Tamir Bendory1.   

Abstract

We consider the two-dimensional multi-target detection (MTD) problem of estimating a target image from a noisy measurement that contains multiple copies of the image, each randomly rotated and translated. The MTD model serves as a mathematical abstraction of the structure reconstruction problem in single-particle cryo-electron microscopy, the chief motivation of this study. We focus on high noise regimes, where accurate detection of image occurrences within a measurement is impossible. To estimate the image, we develop an expectation-maximization framework that aims to maximize an approximation of the likelihood function. We demonstrate image recovery in highly noisy environments, and show that our framework outperforms the previously studied autocorrelation analysis in a wide range of parameters.

Entities:  

Keywords:  Expectation-maximization; cryo-electron microscopy; multi-target detection

Year:  2022        PMID: 35601688      PMCID: PMC9119315          DOI: 10.1109/lsp.2022.3167335

Source DB:  PubMed          Journal:  IEEE Signal Process Lett        ISSN: 1070-9908            Impact factor:   3.201


  12 in total

1.  SubspaceEM: A fast maximum-a-posteriori algorithm for cryo-EM single particle reconstruction.

Authors:  Nicha C Dvornek; Fred J Sigworth; Hemant D Tagare
Journal:  J Struct Biol       Date:  2015-03-31       Impact factor: 2.867

2.  Fourier-Bessel rotational invariant eigenimages.

Authors:  Zhizhen Zhao; Amit Singer
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2013-05-01       Impact factor: 2.129

3.  Current limitations to high-resolution structure determination by single-particle cryoEM.

Authors:  Edoardo D'Imprima; Werner Kühlbrandt
Journal:  Q Rev Biophys       Date:  2021-03-11       Impact factor: 5.318

4.  cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.

Authors:  Ali Punjani; John L Rubinstein; David J Fleet; Marcus A Brubaker
Journal:  Nat Methods       Date:  2017-02-06       Impact factor: 28.547

5.  Bispectrum Inversion with Application to Multireference Alignment.

Authors:  Tamir Bendory; Nicolas Boumal; Chao Ma; Zhizhen Zhao; Amit Singer
Journal:  IEEE Trans Signal Process       Date:  2017-11-20       Impact factor: 4.931

6.  Multi-target Detection with an Arbitrary Spacing Distribution.

Authors:  Ti-Yen Lan; Tamir Bendory; Nicolas Boumal; Amit Singer
Journal:  IEEE Trans Signal Process       Date:  2020-02-24       Impact factor: 4.931

7.  Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportunities.

Authors:  Tamir Bendory; Alberto Bartesaghi; Amit Singer
Journal:  IEEE Signal Process Mag       Date:  2020-02-27       Impact factor: 12.551

Review 8.  The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules.

Authors:  R Henderson
Journal:  Q Rev Biophys       Date:  1995-05       Impact factor: 5.318

9.  The development of cryo-EM into a mainstream structural biology technique.

Authors:  Eva Nogales
Journal:  Nat Methods       Date:  2016-01       Impact factor: 28.547

Review 10.  How cryo-EM is revolutionizing structural biology.

Authors:  Xiao-chen Bai; Greg McMullan; Sjors H W Scheres
Journal:  Trends Biochem Sci       Date:  2014-11-07       Impact factor: 13.807

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