Literature DB >> 33746466

Multi-target Detection with an Arbitrary Spacing Distribution.

Ti-Yen Lan1, Tamir Bendory1, Nicolas Boumal1, Amit Singer1.   

Abstract

Motivated by the structure reconstruction problem in single-particle cryo-electron microscopy, we consider the multi-target detection model, where multiple copies of a target signal occur at unknown locations in a long measurement, further corrupted by additive Gaussian noise. At low noise levels, one can easily detect the signal occurrences and estimate the signal by averaging. However, in the presence of high noise, which is the focus of this paper, detection is impossible. Here, we propose two approaches-autocorrelation analysis and an approximate expectation maximization algorithm-to reconstruct the signal without the need to detect signal occurrences in the measurement. In particular, our methods apply to an arbitrary spacing distribution of signal occurrences. We demonstrate reconstructions with synthetic data and empirically show that the sample complexity of both methods scales as SNR-3 in the low SNR regime.

Entities:  

Keywords:  autocorrelation analysis; blind deconvolution; cryo-EM; expectation maximization; frequency marching

Year:  2020        PMID: 33746466      PMCID: PMC7977005          DOI: 10.1109/tsp.2020.2975943

Source DB:  PubMed          Journal:  IEEE Trans Signal Process        ISSN: 1053-587X            Impact factor:   4.931


  6 in total

Review 1.  Three-dimensional imaging by deconvolution microscopy.

Authors:  J G McNally; T Karpova; J Cooper; J A Conchello
Journal:  Methods       Date:  1999-11       Impact factor: 3.608

2.  SubspaceEM: A fast maximum-a-posteriori algorithm for cryo-EM single particle reconstruction.

Authors:  Nicha C Dvornek; Fred J Sigworth; Hemant D Tagare
Journal:  J Struct Biol       Date:  2015-03-31       Impact factor: 2.867

3.  Bispectrum Inversion with Application to Multireference Alignment.

Authors:  Tamir Bendory; Nicolas Boumal; Chao Ma; Zhizhen Zhao; Amit Singer
Journal:  IEEE Trans Signal Process       Date:  2017-11-20       Impact factor: 4.931

4.  Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportunities.

Authors:  Tamir Bendory; Alberto Bartesaghi; Amit Singer
Journal:  IEEE Signal Process Mag       Date:  2020-02-27       Impact factor: 12.551

Review 5.  The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules.

Authors:  R Henderson
Journal:  Q Rev Biophys       Date:  1995-05       Impact factor: 5.318

6.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

  6 in total
  2 in total

1.  Random conical tilt reconstruction without particle picking in cryo-electron microscopy.

Authors:  Ti Yen Lan; Nicolas Boumal; Amit Singer
Journal:  Acta Crystallogr A Found Adv       Date:  2022-06-24       Impact factor: 2.331

2.  An approximate expectation-maximization for two-dimensional multi-target detection.

Authors:  Shay Kreymer; Amit Singer; Tamir Bendory
Journal:  IEEE Signal Process Lett       Date:  2022-04-13       Impact factor: 3.201

  2 in total

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