Literature DB >> 27110629

The development of cryo-EM into a mainstream structural biology technique.

Eva Nogales.   

Abstract

Single-particle cryo-electron microscopy (cryo-EM) has emerged over the last two decades as a technique capable of studying challenging systems that otherwise defy structural characterization. Recent technical advances have resulted in a 'quantum leap' in applicability, throughput and achievable resolution that has gained this technique worldwide attention. Here I discuss some of the major historical landmarks in the development of the cryo-EM field, ultimately leading to its present success.

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Year:  2016        PMID: 27110629      PMCID: PMC4913480          DOI: 10.1038/nmeth.3694

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  38 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  FREALIGN: high-resolution refinement of single particle structures.

Authors:  Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2006-06-02       Impact factor: 2.867

3.  Image processing for electron microscopy single-particle analysis using XMIPP.

Authors:  Sjors H W Scheres; Rafael Núñez-Ramírez; Carlos O S Sorzano; José María Carazo; Roberto Marabini
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

4.  Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

Authors:  J F Conway; N Cheng; A Zlotnick; P T Wingfield; S J Stahl; A C Steven
Journal:  Nature       Date:  1997-03-06       Impact factor: 49.962

5.  Acetylcholine receptor channel imaged in the open state.

Authors:  N Unwin
Journal:  Nature       Date:  1995-01-05       Impact factor: 49.962

6.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

Authors:  R Henderson; J M Baldwin; T A Ceska; F Zemlin; E Beckmann; K H Downing
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

7.  Human TFIID binds to core promoter DNA in a reorganized structural state.

Authors:  Michael A Cianfrocco; George A Kassavetis; Patricia Grob; Jie Fang; Tamar Juven-Gershon; James T Kadonaga; Eva Nogales
Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

8.  Molecular architecture of a eukaryotic translational initiation complex.

Authors:  Israel S Fernández; Xiao-Chen Bai; Tanweer Hussain; Ann C Kelley; Jon R Lorsch; V Ramakrishnan; Sjors H W Scheres
Journal:  Science       Date:  2013-11-07       Impact factor: 47.728

9.  Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles.

Authors:  Xiao-Chen Bai; Israel S Fernandez; Greg McMullan; Sjors H W Scheres
Journal:  Elife       Date:  2013-02-19       Impact factor: 8.140

10.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

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  107 in total

1.  How good can cryo-EM become?

Authors:  Robert M Glaeser
Journal:  Nat Methods       Date:  2016-01       Impact factor: 28.547

2.  Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling.

Authors:  Massimiliano Bonomi; Samuel Hanot; Charles H Greenberg; Andrej Sali; Michael Nilges; Michele Vendruscolo; Riccardo Pellarin
Journal:  Structure       Date:  2018-11-01       Impact factor: 5.006

3.  Cellular connectomes as arbiters of local circuit models in the cerebral cortex.

Authors:  Emmanuel Klinger; Alessandro Motta; Carsten Marr; Fabian J Theis; Moritz Helmstaedter
Journal:  Nat Commun       Date:  2021-05-13       Impact factor: 14.919

4.  Frontiers in CryoEM Modeling.

Authors:  Giulia Palermo; Yuji Sugita; Willy Wriggers; Rommie E Amaro
Journal:  J Chem Inf Model       Date:  2019-06-13       Impact factor: 4.956

Review 5.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

Review 6.  Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations.

Authors:  Giulia Palermo; Lorenzo Casalino; Alessandra Magistrato; J Andrew McCammon
Journal:  J Struct Biol       Date:  2019-03-15       Impact factor: 2.867

7.  Switching dynein motors on and off.

Authors:  Gaia Pigino; Stephen M King
Journal:  Nat Struct Mol Biol       Date:  2017-07-06       Impact factor: 15.369

8.  A novel storage system for cryoEM samples.

Authors:  Giovanna Scapin; Winifred W Prosise; Michael K Wismer; Corey Strickland
Journal:  J Struct Biol       Date:  2017-04-19       Impact factor: 2.867

9.  Method to Visualize and Analyze Membrane Interacting Proteins by Transmission Electron Microscopy.

Authors:  Ramakrishnan B Kumar; Lin Zhu; Hans Hebert; Caroline Jegerschöld
Journal:  J Vis Exp       Date:  2017-03-05       Impact factor: 1.355

Review 10.  Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell.

Authors:  Axel A Ekman; Jian-Hua Chen; Jessica Guo; Gerry McDermott; Mark A Le Gros; Carolyn A Larabell
Journal:  Biol Cell       Date:  2016-11-14       Impact factor: 4.458

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