Literature DB >> 35576465

Existence of twisting in dislocation-free protein single crystals.

Marina Abe1, Ryo Suzuki1,2, Keiichi Hirano3, Haruhiko Koizumi4, Kenichi Kojima1, Masaru Tachibana1.   

Abstract

The growth of high-quality protein crystals is a prerequisite for the structure analysis of proteins by X-ray diffraction. However, dislocation-free perfect crystals such as silicon and diamond have been so far limited to only two kinds of protein crystals, such as glucose isomerase and ferritin crystals. It is expected that many other high-quality or dislocation-free protein crystals still exhibit some imperfection. The clarification of the cause of imperfection is essential for the improvement of crystallinity. Here, we explore twisting as a cause of the imperfection in high-quality protein crystals of hen egg-white lysozyme crystals with polymorphisms (different crystal forms) by digital X-ray topography with synchrotron radiation. The magnitude of the observed twisting is 10−6 to 10−5°/μm which is more than two orders smaller than 10−3 to 104°/μm in other twisted crystals owing to technique limitations with optical and electron microscopy. Twisting is clearly observed in small crystals or in the initial stage of crystal growth. It is uniformly relaxed with crystal growth and becomes smaller in larger crystals. Twisting is one of main residual defects in high-quality crystals and determines the crystal perfection. Furthermore, it is presumed that the handedness of twisting can be ascribed to the anisotropic interaction of chiral protein molecules associated with asymmetric units in the crystal forms. This mechanism of twisting may correspond to the geometric frustration proposed as a primary mechanism of twisting in molecular crystals. Our finding provides insights for the understanding of growth mechanism and the growth control of high-quality crystals.

Entities:  

Keywords:  X-ray diffraction; chirality; crystal growth; helical structure; protein crystal

Mesh:

Substances:

Year:  2022        PMID: 35576465      PMCID: PMC9173801          DOI: 10.1073/pnas.2120846119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  15 in total

1.  Accurate rocking-curve measurements on protein crystals grown in a homogeneous magnetic field of 2.4 T.

Authors:  Daniel Lübbert; Alke Meents; Edgar Weckert
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21

2.  Emergence of morphological chirality from twinned crystals.

Authors:  Hiroaki Imai; Yuya Oaki
Journal:  Angew Chem Int Ed Engl       Date:  2004-03-05       Impact factor: 15.336

3.  Two types of amorphous protein particles facilitate crystal nucleation.

Authors:  Tomoya Yamazaki; Yuki Kimura; Peter G Vekilov; Erika Furukawa; Manabu Shirai; Hiroaki Matsumoto; Alexander E S Van Driessche; Katsuo Tsukamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-13       Impact factor: 11.205

4.  A mechanism of ferritin crystallization revealed by cryo-STEM tomography.

Authors:  Lothar Houben; Haim Weissman; Sharon G Wolf; Boris Rybtchinski
Journal:  Nature       Date:  2020-03-25       Impact factor: 49.962

Review 5.  Insights into protein misfolding and aggregation enabled by solid-state NMR spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Solid State Nucl Magn Reson       Date:  2017-10-04       Impact factor: 2.293

6.  Analysis of oscillatory rocking curve by dynamical diffraction in protein crystals.

Authors:  Ryo Suzuki; Haruhiko Koizumi; Keiichi Hirano; Takashi Kumasaka; Kenichi Kojima; Masaru Tachibana
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-21       Impact factor: 11.205

7.  Eshelby Twist as a Possible Source of Lattice Rotation in a Perfectly Ordered Protein/Silica Structure Grown by a Simple Organism.

Authors:  Igor Zlotnikov; Peter Werner; Peter Fratzl; Emil Zolotoyabko
Journal:  Small       Date:  2015-09-14       Impact factor: 13.281

8.  Lipid nanotubes as substrates for helical crystallization of macromolecules.

Authors:  E M Wilson-Kubalek; R E Brown; H Celia; R A Milligan
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

9.  Chiral twisted van der Waals nanowires.

Authors:  Peter Sutter; Shawn Wimer; Eli Sutter
Journal:  Nature       Date:  2019-04-22       Impact factor: 49.962

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