Literature DB >> 29563230

Analysis of oscillatory rocking curve by dynamical diffraction in protein crystals.

Ryo Suzuki1, Haruhiko Koizumi2, Keiichi Hirano3, Takashi Kumasaka4, Kenichi Kojima5, Masaru Tachibana6.   

Abstract

High-quality protein crystals meant for structural analysis by X-ray diffraction have been grown by various methods. The observation of dynamical diffraction in protein crystals is an interesting topic because dynamical diffraction generally occurs in perfect crystals such as Si crystals. However, to our knowledge, there is no report yet on protein crystals showing clear dynamical diffraction. We wonder whether the perfection of protein crystals might still be low compared with that of high-quality Si crystals. Here, we present observations of the oscillatory profile of rocking curves for protein crystals such as glucose isomerase crystals. The oscillatory profiles are in good agreement with those predicted by the dynamical theory of diffraction. We demonstrate that dynamical diffraction occurs even in protein crystals. This suggests the possibility of the use of dynamical diffraction for the determination of the structure and charge density of proteins.

Entities:  

Keywords:  X-ray topography; dynamical diffraction; glucose isomerase; protein crystal; rocking curve

Mesh:

Substances:

Year:  2018        PMID: 29563230      PMCID: PMC5889653          DOI: 10.1073/pnas.1720098115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

1.  Triple-axis X-ray diffraction analyses of lysozyme crystals.

Authors:  H M Volz; R J Matyi
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-07

2.  Phase sensitive x-ray diffraction imaging of defects in biological macromolecular crystals.

Authors:  Z W Hu; B Lai; Y S Chu; Z Cai; D C Mancini; B R Thomas; A A Chernov
Journal:  Phys Rev Lett       Date:  2001-09-12       Impact factor: 9.161

3.  Improvements in lysozyme protein crystal perfection through microgravity growth.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1995-11-01

Review 4.  Defect analysis in crystals using X-ray topography.

Authors:  Balaji Raghothamachar; Govindhan Dhanaraj; Jie Bai; Michael Dudley
Journal:  Microsc Res Tech       Date:  2006-05       Impact factor: 2.769

5.  Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 Å.

Authors:  Yu Hirano; Kazuki Takeda; Kunio Miki
Journal:  Nature       Date:  2016-05-18       Impact factor: 49.962

6.  Charge density investigations on [2,2]-paracyclophane – in data we trust.

Authors:  Hilke Wolf; Mads R V Jørgensen; Yu-Sheng Chen; Regine Herbst-Irmer; Dietmar Stalke
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2015-01-20

7.  X-ray analysis of D-xylose isomerase at 1.9 A: native enzyme in complex with substrate and with a mechanism-designed inactivator.

Authors:  H L Carrell; J P Glusker; V Burger; F Manfre; D Tritsch; J F Biellmann
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

8.  The dielectric constant of a folded protein.

Authors:  M K Gilson; B H Honig
Journal:  Biopolymers       Date:  1986-11       Impact factor: 2.505

9.  Exploiting fast detectors to enter a new dimension in room-temperature crystallography.

Authors:  Robin L Owen; Neil Paterson; Danny Axford; Jun Aishima; Clemens Schulze-Briese; Jingshan Ren; Elizabeth E Fry; David I Stuart; Gwyndaf Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-04-26

10.  Room-temperature macromolecular serial crystallography using synchrotron radiation.

Authors:  Francesco Stellato; Dominik Oberthür; Mengning Liang; Richard Bean; Cornelius Gati; Oleksandr Yefanov; Anton Barty; Anja Burkhardt; Pontus Fischer; Lorenzo Galli; Richard A Kirian; Jan Meyer; Saravanan Panneerselvam; Chun Hong Yoon; Fedor Chervinskii; Emily Speller; Thomas A White; Christian Betzel; Alke Meents; Henry N Chapman
Journal:  IUCrJ       Date:  2014-05-30       Impact factor: 4.769

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  1 in total

1.  Existence of twisting in dislocation-free protein single crystals.

Authors:  Marina Abe; Ryo Suzuki; Keiichi Hirano; Haruhiko Koizumi; Kenichi Kojima; Masaru Tachibana
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-16       Impact factor: 12.779

  1 in total

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