Literature DB >> 28193873

Two types of amorphous protein particles facilitate crystal nucleation.

Tomoya Yamazaki1,2, Yuki Kimura3, Peter G Vekilov4,5, Erika Furukawa2, Manabu Shirai6, Hiroaki Matsumoto6, Alexander E S Van Driessche7, Katsuo Tsukamoto2.   

Abstract

Nucleation, the primary step in crystallization, dictates the number of crystals, the distribution of their sizes, the polymorph selection, and other crucial properties of the crystal population. We used time-resolved liquid-cell transmission electron microscopy (TEM) to perform an in situ examination of the nucleation of lysozyme crystals. Our TEM images revealed that mesoscopic clusters, which are similar to those previously assumed to consist of a dense liquid and serve as nucleation precursors, are actually amorphous solid particles (ASPs) and act only as heterogeneous nucleation sites. Crystalline phases never form inside them. We demonstrate that a crystal appears within a noncrystalline particle assembling lysozyme on an ASP or a container wall, highlighting the role of heterogeneous nucleation. These findings represent a significant departure from the existing formulation of the two-step nucleation mechanism while reaffirming the role of noncrystalline particles. The insights gained may have significant implications in areas that rely on the production of protein crystals, such as structural biology, pharmacy, and biophysics, and for the fundamental understanding of crystallization mechanisms.

Entities:  

Keywords:  in situ observation; lysozyme; nucleation; protein; transmission electron microscopy

Year:  2017        PMID: 28193873      PMCID: PMC5338535          DOI: 10.1073/pnas.1606948114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

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Authors:  J R Savage; A D Dinsmore
Journal:  Phys Rev Lett       Date:  2009-05-15       Impact factor: 9.161

3.  Enhancement of protein crystal nucleation by critical density fluctuations.

Authors:  P R ten Wolde; D Frenkel
Journal:  Science       Date:  1997-09-26       Impact factor: 47.728

4.  On the question of two-step nucleation in protein crystallization.

Authors:  Andrea Sauter; Felix Roosen-Runge; Fajun Zhang; Gudrun Lotze; Artem Feoktystov; Robert M J Jacobs; Frank Schreiber
Journal:  Faraday Discuss       Date:  2015-04-16       Impact factor: 4.008

5.  Crystal nucleation: Nucleus in a droplet.

Authors:  Peter G Vekilov
Journal:  Nat Mater       Date:  2012-10       Impact factor: 43.841

6.  Mechanism of crystalline self-assembly in aqueous medium: a combined cryo-TEM/kinetic study.

Authors:  Yaron Tidhar; Haim Weissman; Dmitry Tworowski; Boris Rybtchinski
Journal:  Chemistry       Date:  2014-07-15       Impact factor: 5.236

7.  Role of clusters in nonclassical nucleation and growth of protein crystals.

Authors:  Mike Sleutel; Alexander E S Van Driessche
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

8.  The initial stages of template-controlled CaCO3 formation revealed by cryo-TEM.

Authors:  Emilie M Pouget; Paul H H Bomans; Jeroen A C M Goos; Peter M Frederik; Gijsbertus de With; Nico A J M Sommerdijk
Journal:  Science       Date:  2009-03-13       Impact factor: 47.728

9.  In situ TEM imaging of CaCO₃ nucleation reveals coexistence of direct and indirect pathways.

Authors:  Michael H Nielsen; Shaul Aloni; James J De Yoreo
Journal:  Science       Date:  2014-09-05       Impact factor: 47.728

10.  Do protein crystals nucleate within dense liquid clusters?

Authors:  Dominique Maes; Maria A Vorontsova; Marco A C Potenza; Tiziano Sanvito; Mike Sleutel; Marzio Giglio; Peter G Vekilov
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

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  17 in total

1.  Molecular nucleation mechanisms and control strategies for crystal polymorph selection.

Authors:  Alexander E S Van Driessche; Nani Van Gerven; Paul H H Bomans; Rick R M Joosten; Heiner Friedrich; David Gil-Carton; Nico A J M Sommerdijk; Mike Sleutel
Journal:  Nature       Date:  2018-04-04       Impact factor: 49.962

2.  Observations of the birth of crystals.

Authors:  Robert G Alberstein; F Akif Tezcan
Journal:  Nature       Date:  2018-04       Impact factor: 49.962

3.  Existence of twisting in dislocation-free protein single crystals.

Authors:  Marina Abe; Ryo Suzuki; Keiichi Hirano; Haruhiko Koizumi; Kenichi Kojima; Masaru Tachibana
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-16       Impact factor: 12.779

4.  Feasibility of control of particle assembly by dielectrophoresis in liquid-cell transmission electron microscopy.

Authors:  Tomoya Yamazaki; Hiromasa Niinomi; Yuki Kimura
Journal:  Microscopy (Oxf)       Date:  2022-08-01       Impact factor: 2.072

5.  Heparin-dependent aggregation of hen egg white lysozyme reveals two distinct mechanisms of amyloid fibrillation.

Authors:  Ayame Nitani; Hiroya Muta; Masayuki Adachi; Masatomo So; Kenji Sasahara; Kazumasa Sakurai; Eri Chatani; Kazumitsu Naoe; Hirotsugu Ogi; Damien Hall; Yuji Goto
Journal:  J Biol Chem       Date:  2017-11-03       Impact factor: 5.157

6.  Polymerization-Induced Self-Assembly of Micelles Observed by Liquid Cell Transmission Electron Microscopy.

Authors:  Mollie A Touve; C Adrian Figg; Daniel B Wright; Chiwoo Park; Joshua Cantlon; Brent S Sumerlin; Nathan C Gianneschi
Journal:  ACS Cent Sci       Date:  2018-04-25       Impact factor: 14.553

7.  Crystallization of Organic Molecules: Nonclassical Mechanism Revealed by Direct Imaging.

Authors:  Yael Tsarfati; Shaked Rosenne; Haim Weissman; Linda J W Shimon; Dvir Gur; Benjamin A Palmer; Boris Rybtchinski
Journal:  ACS Cent Sci       Date:  2018-07-27       Impact factor: 14.553

8.  A mechanism for reversible mesoscopic aggregation in liquid solutions.

Authors:  Ho Yin Chan; Vassiliy Lubchenko
Journal:  Nat Commun       Date:  2019-05-30       Impact factor: 14.919

9.  Anomalous Dense Liquid Condensates Host the Nucleation of Tumor Suppressor p53 Fibrils.

Authors:  Mohammad S Safari; Zhiqing Wang; Kunaal Tailor; Anatoly B Kolomeisky; Jacinta C Conrad; Peter G Vekilov
Journal:  iScience       Date:  2019-01-24

10.  Nucleation of protein mesocrystals via oriented attachment.

Authors:  Alexander E S Van Driessche; Nani Van Gerven; Rick R M Joosten; Wai Li Ling; Maria Bacia; Nico Sommerdijk; Mike Sleutel
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

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