Literature DB >> 29035839

Insights into protein misfolding and aggregation enabled by solid-state NMR spectroscopy.

Patrick C A van der Wel1.   

Abstract

The aggregation of proteins and peptides into a variety of insoluble, and often non-native, aggregated states plays a central role in many devastating diseases. Analogous processes undermine the efficacy of polypeptide-based biological pharmaceuticals, but are also being leveraged in the design of biologically inspired self-assembling materials. This Trends article surveys the essential contributions made by recent solid-state NMR (ssNMR) studies to our understanding of the structural features of polypeptide aggregates, and how such findings are informing our thinking about the molecular mechanisms of misfolding and aggregation. A central focus is on disease-related amyloid fibrils and oligomers involved in neurodegenerative diseases such as Alzheimer's, Parkinson's and Huntington's disease. SSNMR-enabled structural and dynamics-based findings are surveyed, along with a number of resulting emerging themes that appear common to different amyloidogenic proteins, such as their compact alternating short-β-strand/β-arc amyloid core architecture. Concepts, methods, future prospects and challenges are discussed.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amyloid; Magic-angle spinning; Neurodegenerative disease; Prions; Protein dynamics; Protein misfolding; Protein structure; Structural biology

Mesh:

Substances:

Year:  2017        PMID: 29035839      PMCID: PMC5705391          DOI: 10.1016/j.ssnmr.2017.10.001

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  153 in total

1.  The functional curli amyloid is not based on in-register parallel beta-sheet structure.

Authors:  Frank Shewmaker; Ryan P McGlinchey; Kent R Thurber; Peter McPhie; Fred Dyda; Robert Tycko; Reed B Wickner
Journal:  J Biol Chem       Date:  2009-07-01       Impact factor: 5.157

2.  Unambiguous assignment of short- and long-range structural restraints by solid-state NMR spectroscopy with segmental isotope labeling.

Authors:  Tobias Schubeis; Thorsten Lührs; Christiane Ritter
Journal:  Chembiochem       Date:  2014-11-12       Impact factor: 3.164

3.  Combining DNP NMR with segmental and specific labeling to study a yeast prion protein strain that is not parallel in-register.

Authors:  Kendra K Frederick; Vladimir K Michaelis; Marc A Caporini; Loren B Andreas; Galia T Debelouchina; Robert G Griffin; Susan Lindquist
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-22       Impact factor: 11.205

Review 4.  Therapeutic protein aggregation: mechanisms, design, and control.

Authors:  Christopher J Roberts
Journal:  Trends Biotechnol       Date:  2014-06-04       Impact factor: 19.536

5.  Distinct prion strains are defined by amyloid core structure and chaperone binding site dynamics.

Authors:  Kendra K Frederick; Galia T Debelouchina; Can Kayatekin; Tea Dorminy; Angela C Jacavone; Robert G Griffin; Susan Lindquist
Journal:  Chem Biol       Date:  2014-01-30

6.  Structural studies of proteins by paramagnetic solid-state NMR spectroscopy.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

7.  Abeta(1-40) forms five distinct amyloid structures whose beta-sheet contents and fibril stabilities are correlated.

Authors:  Ravindra Kodali; Angela D Williams; Saketh Chemuru; Ronald Wetzel
Journal:  J Mol Biol       Date:  2010-06-18       Impact factor: 5.469

8.  Structural characterization of GNNQQNY amyloid fibrils by magic angle spinning NMR.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

9.  Solid-state NMR study of amyloid nanocrystals and fibrils formed by the peptide GNNQQNY from yeast prion protein Sup35p.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-03-31       Impact factor: 15.419

10.  An anticancer drug suppresses the primary nucleation reaction that initiates the production of the toxic Aβ42 aggregates linked with Alzheimer's disease.

Authors:  Johnny Habchi; Paolo Arosio; Michele Perni; Ana Rita Costa; Maho Yagi-Utsumi; Priyanka Joshi; Sean Chia; Samuel I A Cohen; Martin B D Müller; Sara Linse; Ellen A A Nollen; Christopher M Dobson; Tuomas P J Knowles; Michele Vendruscolo
Journal:  Sci Adv       Date:  2016-02-12       Impact factor: 14.136

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  20 in total

1.  Protofilament Structure and Supramolecular Polymorphism of Aggregated Mutant Huntingtin Exon 1.

Authors:  Jennifer C Boatz; Talia Piretra; Alessia Lasorsa; Irina Matlahov; James F Conway; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2020-06-27       Impact factor: 5.469

2.  MOMD Analysis of NMR Line Shapes from Aβ-Amyloid Fibrils: A New Tool for Characterizing Molecular Environments in Protein Aggregates.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-05-02       Impact factor: 2.991

3.  Methionine oxidized apolipoprotein A-I at the crossroads of HDL biogenesis and amyloid formation.

Authors:  Andrzej Witkowski; Gary K L Chan; Jennifer C Boatz; Nancy J Li; Ayuka P Inoue; Jaclyn C Wong; Patrick C A van der Wel; Giorgio Cavigiolio
Journal:  FASEB J       Date:  2018-01-17       Impact factor: 5.191

4.  Detection of side-chain proton resonances of fully protonated biosolids in nano-litre volumes by magic angle spinning solid-state NMR.

Authors:  James Tolchard; Manoj Kumar Pandey; Mélanie Berbon; Abdelmajid Noubhani; Sven J Saupe; Yusuke Nishiyama; Birgit Habenstein; Antoine Loquet
Journal:  J Biomol NMR       Date:  2018-03-03       Impact factor: 2.835

Review 5.  Hidden motions and motion-induced invisibility: Dynamics-based spectral editing in solid-state NMR.

Authors:  Irina Matlahov; Patrick C A van der Wel
Journal:  Methods       Date:  2018-04-24       Impact factor: 3.608

6.  Two decades of progress in structural and dynamic studies of amyloids by solid-state NMR.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2019-07-09       Impact factor: 2.229

7.  Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-09-10       Impact factor: 2.991

Review 8.  Half a century of amyloids: past, present and future.

Authors:  Pu Chun Ke; Ruhong Zhou; Louise C Serpell; Roland Riek; Tuomas P J Knowles; Hilal A Lashuel; Ehud Gazit; Ian W Hamley; Thomas P Davis; Marcus Fändrich; Daniel Erik Otzen; Matthew R Chapman; Christopher M Dobson; David S Eisenberg; Raffaele Mezzenga
Journal:  Chem Soc Rev       Date:  2020-07-07       Impact factor: 54.564

Review 9.  Recent developments in deuterium solid-state NMR for the detection of slow motions in proteins.

Authors:  Liliya Vugmeyster
Journal:  Solid State Nucl Magn Reson       Date:  2021-01-07       Impact factor: 2.293

Review 10.  Chemical Properties Determine Solubility and Stability in βγ-Crystallins of the Eye Lens.

Authors:  Megan A Rocha; Marc A Sprague-Piercy; Ashley O Kwok; Kyle W Roskamp; Rachel W Martin
Journal:  Chembiochem       Date:  2021-02-10       Impact factor: 3.164

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