Literature DB >> 35441703

Seizure forecasting using minimally invasive, ultra-long-term subcutaneous EEG: Generalizable cross-patient models.

Tal Pal Attia1, Pedro F Viana2,3,4, Mona Nasseri1,5, Jonas Duun-Henriksen6, Andrea Biondi2,3, Joel S Winston2,3, Isabel P Martins4, Ewan S Nurse7,8, Matthias Dümpelmann9, Gregory A Worrell1, Andreas Schulze-Bonhage9, Dean R Freestone7,8, Troels W Kjaer10,11, Benjamin H Brinkmann1, Mark P Richardson2,3,12.   

Abstract

This study describes a generalized cross-patient seizure-forecasting approach using recurrent neural networks with ultra-long-term subcutaneous EEG (sqEEG) recordings. Data from six patients diagnosed with refractory epilepsy and monitored with an sqEEG device were used to develop a generalized algorithm for seizure forecasting using long short-term memory (LSTM) deep-learning classifiers. Electrographic seizures were identified by a board-certified epileptologist. One-minute data segments were labeled as preictal or interictal based on their relationship to confirmed seizures. Data were separated into training and testing data sets, and to compensate for the unbalanced data ratio in training, noise-added copies of preictal data segments were generated to expand the training data set. The mean and standard deviation (SD) of the training data were used to normalize all data, preserving the pseudo-prospective nature of the analysis. Different architecture classifiers were trained and tested using a leave-one-patient-out cross-validation method, and the area under the receiver-operating characteristic (ROC) curve (AUC) was used to evaluate the performance classifiers. The importance of each input signal was evaluated using a leave-one-signal-out method with repeated training and testing for each classifier. Cross-patient classifiers achieved performance significantly better than chance in four of the six patients and an overall mean AUC of 0.602 ± 0.126 (mean ± SD). A time in warning of 37.386% ± 5.006% (mean ± std) and sensitivity of 0.691 ± 0.068 (mean ± std) were observed for patients with better than chance results. Analysis of input channels showed a significant contribution (p < .05) by the Fourier transform of signals channels to overall classifier performance. The relative contribution of input signals varied among patients and architectures, suggesting that the inclusion of all signals contributes to robustness in a cross-patient classifier. These early results show that it is possible to forecast seizures training with data from different patients using two-channel ultra-long-term sqEEG.
© 2022 International League Against Epilepsy.

Entities:  

Keywords:  LSTM neural networks; deep neural networks; epilepsy; machine learning; seizure forecasting; subcutaneous EEG

Year:  2022        PMID: 35441703      PMCID: PMC9582039          DOI: 10.1111/epi.17265

Source DB:  PubMed          Journal:  Epilepsia        ISSN: 0013-9580            Impact factor:   6.740


  28 in total

Review 1.  Seizure prediction - ready for a new era.

Authors:  Levin Kuhlmann; Klaus Lehnertz; Mark P Richardson; Björn Schelter; Hitten P Zaveri
Journal:  Nat Rev Neurol       Date:  2018-10       Impact factor: 42.937

2.  Machine learning from wristband sensor data for wearable, noninvasive seizure forecasting.

Authors:  Christian Meisel; Rima El Atrache; Michele Jackson; Sarah Schubach; Claire Ufongene; Tobias Loddenkemper
Journal:  Epilepsia       Date:  2020-10-11       Impact factor: 5.864

3.  Testing the null hypothesis of the nonexistence of a preseizure state.

Authors:  Ralph G Andrzejak; Florian Mormann; Thomas Kreuz; Christoph Rieke; Alexander Kraskov; Christian E Elger; Klaus Lehnertz
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-01-07

4.  Prediction of seizure likelihood with a long-term, implanted seizure advisory system in patients with drug-resistant epilepsy: a first-in-man study.

Authors:  Mark J Cook; Terence J O'Brien; Samuel F Berkovic; Michael Murphy; Andrew Morokoff; Gavin Fabinyi; Wendyl D'Souza; Raju Yerra; John Archer; Lucas Litewka; Sean Hosking; Paul Lightfoot; Vanessa Ruedebusch; W Douglas Sheffield; David Snyder; Kent Leyde; David Himes
Journal:  Lancet Neurol       Date:  2013-05-02       Impact factor: 44.182

5.  Epilepsyecosystem.org: crowd-sourcing reproducible seizure prediction with long-term human intracranial EEG.

Authors:  Levin Kuhlmann; Philippa Karoly; Dean R Freestone; Benjamin H Brinkmann; Andriy Temko; Alexandre Barachant; Feng Li; Gilberto Titericz; Brian W Lang; Daniel Lavery; Kelly Roman; Derek Broadhead; Scott Dobson; Gareth Jones; Qingnan Tang; Irina Ivanenko; Oleg Panichev; Timothée Proix; Michal Náhlík; Daniel B Grunberg; Chip Reuben; Gregory Worrell; Brian Litt; David T J Liley; David B Grayden; Mark J Cook
Journal:  Brain       Date:  2018-09-01       Impact factor: 13.501

6.  Ultra-long-term subcutaneous home monitoring of epilepsy-490 days of EEG from nine patients.

Authors:  Sigge Weisdorf; Jonas Duun-Henriksen; Marianne J Kjeldsen; Frantz R Poulsen; Sirin W Gangstad; Troels W Kjaer
Journal:  Epilepsia       Date:  2019-10-13       Impact factor: 5.864

Review 7.  Under-sampling in epilepsy: Limitations of conventional EEG.

Authors:  Maxime O Baud; Kaspar Schindler; Vikram R Rao
Journal:  Clin Neurophysiol Pract       Date:  2020-12-30

8.  Semi-supervised Training Data Selection Improves Seizure Forecasting in Canines with Epilepsy.

Authors:  Mona Nasseri; Vaclav Kremen; Petr Nejedly; Inyong Kim; Su-Youne Chang; Hang Joon Jo; Hari Guragain; Nathaniel Nelson; Edward Patterson; Beverly K Sturges; Chelsea M Crowe; Tim Denison; Benjamin H Brinkmann; Gregory A Worrell
Journal:  Biomed Signal Process Control       Date:  2019-11-14       Impact factor: 3.880

9.  Signal quality and power spectrum analysis of remote ultra long-term subcutaneous EEG.

Authors:  Pedro F Viana; Line S Remvig; Jonas Duun-Henriksen; Martin Glasstetter; Matthias Dümpelmann; Ewan S Nurse; Isabel P Martins; Andreas Schulze-Bonhage; Dean R Freestone; Benjamin H Brinkmann; Troels W Kjaer; Mark P Richardson
Journal:  Epilepsia       Date:  2021-07-12       Impact factor: 5.864

Review 10.  Seizure Diaries and Forecasting With Wearables: Epilepsy Monitoring Outside the Clinic.

Authors:  Benjamin H Brinkmann; Philippa J Karoly; Ewan S Nurse; Sonya B Dumanis; Mona Nasseri; Pedro F Viana; Andreas Schulze-Bonhage; Dean R Freestone; Greg Worrell; Mark P Richardson; Mark J Cook
Journal:  Front Neurol       Date:  2021-07-13       Impact factor: 4.003

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