Literature DB >> 30101347

Epilepsyecosystem.org: crowd-sourcing reproducible seizure prediction with long-term human intracranial EEG.

Levin Kuhlmann1,2,3, Philippa Karoly1,2, Dean R Freestone1, Benjamin H Brinkmann4, Andriy Temko5, Alexandre Barachant6, Feng Li7, Gilberto Titericz8, Brian W Lang9, Daniel Lavery9, Kelly Roman9, Derek Broadhead9, Scott Dobson9, Gareth Jones10, Qingnan Tang11, Irina Ivanenko12, Oleg Panichev12, Timothée Proix13,14, Michal Náhlík15, Daniel B Grunberg16, Chip Reuben17, Gregory Worrell4, Brian Litt18, David T J Liley1,3, David B Grayden1,2, Mark J Cook1.   

Abstract

Accurate seizure prediction will transform epilepsy management by offering warnings to patients or triggering interventions. However, state-of-the-art algorithm design relies on accessing adequate long-term data. Crowd-sourcing ecosystems leverage quality data to enable cost-effective, rapid development of predictive algorithms. A crowd-sourcing ecosystem for seizure prediction is presented involving an international competition, a follow-up held-out data evaluation, and an online platform, Epilepsyecosystem.org, for yielding further improvements in prediction performance. Crowd-sourced algorithms were obtained via the 'Melbourne-University AES-MathWorks-NIH Seizure Prediction Challenge' conducted at kaggle.com. Long-term continuous intracranial electroencephalography (iEEG) data (442 days of recordings and 211 lead seizures per patient) from prediction-resistant patients who had the lowest seizure prediction performances from the NeuroVista Seizure Advisory System clinical trial were analysed. Contestants (646 individuals in 478 teams) from around the world developed algorithms to distinguish between 10-min inter-seizure versus pre-seizure data clips. Over 10 000 algorithms were submitted. The top algorithms as determined by using the contest data were evaluated on a much larger held-out dataset. The data and top algorithms are available online for further investigation and development. The top performing contest entry scored 0.81 area under the classification curve. The performance reduced by only 6.7% on held-out data. Many other teams also showed high prediction reproducibility. Pseudo-prospective evaluation demonstrated that many algorithms, when used alone or weighted by circadian information, performed better than the benchmarks, including an average increase in sensitivity of 1.9 times the original clinical trial sensitivity for matched time in warning. These results indicate that clinically-relevant seizure prediction is possible in a wider range of patients than previously thought possible. Moreover, different algorithms performed best for different patients, supporting the use of patient-specific algorithms and long-term monitoring. The crowd-sourcing ecosystem for seizure prediction will enable further worldwide community study of the data to yield greater improvements in prediction performance by way of competition, collaboration and synergism.10.1093/brain/awy210_video1awy210media15817489051001.

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Year:  2018        PMID: 30101347      PMCID: PMC6136083          DOI: 10.1093/brain/awy210

Source DB:  PubMed          Journal:  Brain        ISSN: 0006-8950            Impact factor:   13.501


  25 in total

Review 1.  Detecting Neonatal Seizures With Computer Algorithms.

Authors:  Andriy Temko; Gordon Lightbody
Journal:  J Clin Neurophysiol       Date:  2016-10       Impact factor: 2.177

2.  A method of comparing the areas under receiver operating characteristic curves derived from the same cases.

Authors:  J A Hanley; B J McNeil
Journal:  Radiology       Date:  1983-09       Impact factor: 11.105

Review 3.  Seizure prediction for therapeutic devices: A review.

Authors:  Kais Gadhoumi; Jean-Marc Lina; Florian Mormann; Jean Gotman
Journal:  J Neurosci Methods       Date:  2015-06-19       Impact factor: 2.390

Review 4.  Seizure prediction: the long and winding road.

Authors:  Florian Mormann; Ralph G Andrzejak; Christian E Elger; Klaus Lehnertz
Journal:  Brain       Date:  2006-09-28       Impact factor: 13.501

5.  The statistics of a practical seizure warning system.

Authors:  David E Snyder; Javier Echauz; David B Grimes; Brian Litt
Journal:  J Neural Eng       Date:  2008-09-30       Impact factor: 5.379

Review 6.  Technology insight: neuroengineering and epilepsy-designing devices for seizure control.

Authors:  William C Stacey; Brian Litt
Journal:  Nat Clin Pract Neurol       Date:  2008-02-26

7.  The seizure prediction characteristic: a general framework to assess and compare seizure prediction methods.

Authors:  M Winterhalder; T Maiwald; H U Voss; R Aschenbrenner-Scheibe; J Timmer; A Schulze-Bonhage
Journal:  Epilepsy Behav       Date:  2003-06       Impact factor: 2.937

8.  EEG-based neonatal seizure detection with Support Vector Machines.

Authors:  A Temko; E Thomas; W Marnane; G Lightbody; G Boylan
Journal:  Clin Neurophysiol       Date:  2010-08-14       Impact factor: 3.708

9.  Epileptic Seizure Prediction Using Big Data and Deep Learning: Toward a Mobile System.

Authors:  Isabell Kiral-Kornek; Subhrajit Roy; Ewan Nurse; Benjamin Mashford; Philippa Karoly; Thomas Carroll; Daniel Payne; Susmita Saha; Steven Baldassano; Terence O'Brien; David Grayden; Mark Cook; Dean Freestone; Stefan Harrer
Journal:  EBioMedicine       Date:  2017-12-12       Impact factor: 8.143

10.  Crowdsourcing reproducible seizure forecasting in human and canine epilepsy.

Authors:  Benjamin H Brinkmann; Joost Wagenaar; Drew Abbot; Phillip Adkins; Simone C Bosshard; Min Chen; Quang M Tieng; Jialune He; F J Muñoz-Almaraz; Paloma Botella-Rocamora; Juan Pardo; Francisco Zamora-Martinez; Michael Hills; Wei Wu; Iryna Korshunova; Will Cukierski; Charles Vite; Edward E Patterson; Brian Litt; Gregory A Worrell
Journal:  Brain       Date:  2016-03-31       Impact factor: 15.255

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  25 in total

1.  Forecasting seizure risk in adults with focal epilepsy: a development and validation study.

Authors:  Timothée Proix; Wilson Truccolo; Marc G Leguia; Thomas K Tcheng; David King-Stephens; Vikram R Rao; Maxime O Baud
Journal:  Lancet Neurol       Date:  2020-12-17       Impact factor: 44.182

2.  Distributed brain co-processor for tracking spikes, seizures and behaviour during electrical brain stimulation.

Authors:  Vladimir Sladky; Petr Nejedly; Filip Mivalt; Benjamin H Brinkmann; Inyong Kim; Erik K St Louis; Nicholas M Gregg; Brian N Lundstrom; Chelsea M Crowe; Tal Pal Attia; Daniel Crepeau; Irena Balzekas; Victoria S Marks; Lydia P Wheeler; Jan Cimbalnik; Mark Cook; Radek Janca; Beverly K Sturges; Kent Leyde; Kai J Miller; Jamie J Van Gompel; Timothy Denison; Gregory A Worrell; Vaclav Kremen
Journal:  Brain Commun       Date:  2022-05-06

3.  Prediction of Seizure Recurrence. A Note of Caution.

Authors:  William J Bosl; Alan Leviton; Tobias Loddenkemper
Journal:  Front Neurol       Date:  2021-05-13       Impact factor: 4.003

4.  Dynamic training of a novelty classifier algorithm for real-time detection of early seizure onset.

Authors:  Daniel Ehrens; Mackenzie C Cervenka; Gregory K Bergey; Christophe C Jouny
Journal:  Clin Neurophysiol       Date:  2022-01-06       Impact factor: 3.708

Review 5.  Closed-Loop Neural Prostheses With On-Chip Intelligence: A Review and a Low-Latency Machine Learning Model for Brain State Detection.

Authors:  Bingzhao Zhu; Uisub Shin; Mahsa Shoaran
Journal:  IEEE Trans Biomed Circuits Syst       Date:  2021-12-09       Impact factor: 3.833

6.  Identifying seizure risk factors: A comparison of sleep, weather, and temporal features using a Bayesian forecast.

Authors:  Daniel E Payne; Katrina L Dell; Phillipa J Karoly; Vaclav Kremen; Vaclav Gerla; Levin Kuhlmann; Gregory A Worrell; Mark J Cook; David B Grayden; Dean R Freestone
Journal:  Epilepsia       Date:  2020-12-30       Impact factor: 6.740

7.  Semi-supervised Training Data Selection Improves Seizure Forecasting in Canines with Epilepsy.

Authors:  Mona Nasseri; Vaclav Kremen; Petr Nejedly; Inyong Kim; Su-Youne Chang; Hang Joon Jo; Hari Guragain; Nathaniel Nelson; Edward Patterson; Beverly K Sturges; Chelsea M Crowe; Tim Denison; Benjamin H Brinkmann; Gregory A Worrell
Journal:  Biomed Signal Process Control       Date:  2019-11-14       Impact factor: 3.880

Review 8.  Cycles in epilepsy.

Authors:  Philippa J Karoly; Vikram R Rao; Maxime O Baud; Nicholas M Gregg; Gregory A Worrell; Christophe Bernard; Mark J Cook
Journal:  Nat Rev Neurol       Date:  2021-03-15       Impact factor: 42.937

Review 9.  Seizure Diaries and Forecasting With Wearables: Epilepsy Monitoring Outside the Clinic.

Authors:  Benjamin H Brinkmann; Philippa J Karoly; Ewan S Nurse; Sonya B Dumanis; Mona Nasseri; Pedro F Viana; Andreas Schulze-Bonhage; Dean R Freestone; Greg Worrell; Mark P Richardson; Mark J Cook
Journal:  Front Neurol       Date:  2021-07-13       Impact factor: 4.003

10.  Predicting task performance from biomarkers of mental fatigue in global brain activity.

Authors:  Lin Yao; Jonathan L Baker; Nicholas D Schiff; Keith P Purpura; Mahsa Shoaran
Journal:  J Neural Eng       Date:  2021-03-08       Impact factor: 5.379

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