Literature DB >> 32863855

Semi-supervised Training Data Selection Improves Seizure Forecasting in Canines with Epilepsy.

Mona Nasseri1, Vaclav Kremen1,2, Petr Nejedly1, Inyong Kim1, Su-Youne Chang3,4, Hang Joon Jo1, Hari Guragain1, Nathaniel Nelson1, Edward Patterson5, Beverly K Sturges6, Chelsea M Crowe6, Tim Denison7, Benjamin H Brinkmann1,3, Gregory A Worrell1,3.   

Abstract

OBJECTIVE: Conventional selection of pre-ictal EEG epochs for seizure prediction algorithm training data typically assumes a continuous pre-ictal brain state preceding a seizure. This is carried out by defining a fixed duration, pre-ictal time period before seizures from which pre-ictal training data epochs are uniformly sampled. However, stochastic physiological and pathological fluctuations in EEG data characteristics and underlying brain states suggest that pre-ictal state dynamics may be more complex, and selection of pre-ictal training data segments to reflect this could improve algorithm performance.
METHODS: We propose a semi-supervised technique to select pre-ictal training data most distinguishable from interictal EEG according to pre-specified data characteristics. The proposed method uses hierarchical clustering to identify optimal pre-ictal data epochs.
RESULTS: In this paper we compare the performance of a seizure forecasting algorithm with and without hierarchical clustering of pre-ictal periods in chronic iEEG recordings from six canines with naturally occurring epilepsy. Hierarchical clustering of training data improved results for Time In Warning (TIW) (0.18 vs. 0.23) and False Positive Rate (FPR) (0.5 vs. 0.59) when evaluated across all subjects (p<0.001, n=6). Results were mixed when evaluating TIW, FPR, and Sensitivity for individual dogs.
CONCLUSION: Hierarchical clustering is a helpful method for training data selection overall, but should be evaluated on a subject-wise basis. SIGNIFICANCE: The clustering method can be used to optimize results of forecasting towards sensitivity or TIW or FPR, and therefore can be useful for epilepsy management.

Entities:  

Keywords:  Hierarchical clustering; Machine learning; Seizure forecasting

Year:  2019        PMID: 32863855      PMCID: PMC7450725          DOI: 10.1016/j.bspc.2019.101743

Source DB:  PubMed          Journal:  Biomed Signal Process Control        ISSN: 1746-8094            Impact factor:   3.880


  25 in total

Review 1.  What is the present-day EEG evidence for a preictal state?

Authors:  William Stacey; Michel Le Van Quyen; Florian Mormann; Andreas Schulze-Bonhage
Journal:  Epilepsy Res       Date:  2011-08-31       Impact factor: 3.045

2.  Seizure prediction and documentation--two important problems.

Authors:  Christian E Elger; Florian Mormann
Journal:  Lancet Neurol       Date:  2013-05-02       Impact factor: 44.182

3.  A novel implanted device to wirelessly record and analyze continuous intracranial canine EEG.

Authors:  Kathryn A Davis; Beverly K Sturges; Charles H Vite; Vanessa Ruedebusch; Gregory Worrell; Andrew B Gardner; Kent Leyde; W Douglas Sheffield; Brian Litt
Journal:  Epilepsy Res       Date:  2011-06-14       Impact factor: 3.045

4.  A Chronically Implantable Neural Coprocessor for Investigating the Treatment of Neurological Disorders.

Authors:  Scott Stanslaski; Jeffrey Herron; Tom Chouinard; Duane Bourget; Ben Isaacson; Vaclav Kremen; Enrico Opri; William Drew; Benjamin H Brinkmann; Aysegul Gunduz; Tom Adamski; Gregory A Worrell; Timothy Denison
Journal:  IEEE Trans Biomed Circuits Syst       Date:  2018-11-07       Impact factor: 3.833

5.  Towards Improved Design and Evaluation of Epileptic Seizure Predictors.

Authors:  Iryna Korshunova; Pieter-Jan Kindermans; Jonas Degrave; Thibault Verhoeven; Benjamin H Brinkmann; Joni Dambre
Journal:  IEEE Trans Biomed Eng       Date:  2017-05-02       Impact factor: 4.538

6.  Identifying seizure clusters in patients with epilepsy.

Authors:  S R Haut; R B Lipton; A J LeValley; C B Hall; S Shinnar
Journal:  Neurology       Date:  2005-10-25       Impact factor: 9.910

7.  Temporal behavior of seizures and interictal bursts in prolonged intracranial recordings from epileptic canines.

Authors:  Hoameng Ung; Kathryn A Davis; Drausin Wulsin; Joost Wagenaar; Emily Fox; John J McDonnell; Ned Patterson; Charles H Vite; Gregory Worrell; Brian Litt
Journal:  Epilepsia       Date:  2016-11-03       Impact factor: 5.864

8.  Seizure Forecasting and the Preictal State in Canine Epilepsy.

Authors:  Yogatheesan Varatharajah; Ravishankar K Iyer; Brent M Berry; Gregory A Worrell; Benjamin H Brinkmann
Journal:  Int J Neural Syst       Date:  2016-06-14       Impact factor: 5.866

9.  Prediction of seizure likelihood with a long-term, implanted seizure advisory system in patients with drug-resistant epilepsy: a first-in-man study.

Authors:  Mark J Cook; Terence J O'Brien; Samuel F Berkovic; Michael Murphy; Andrew Morokoff; Gavin Fabinyi; Wendyl D'Souza; Raju Yerra; John Archer; Lucas Litewka; Sean Hosking; Paul Lightfoot; Vanessa Ruedebusch; W Douglas Sheffield; David Snyder; Kent Leyde; David Himes
Journal:  Lancet Neurol       Date:  2013-05-02       Impact factor: 44.182

10.  Epilepsyecosystem.org: crowd-sourcing reproducible seizure prediction with long-term human intracranial EEG.

Authors:  Levin Kuhlmann; Philippa Karoly; Dean R Freestone; Benjamin H Brinkmann; Andriy Temko; Alexandre Barachant; Feng Li; Gilberto Titericz; Brian W Lang; Daniel Lavery; Kelly Roman; Derek Broadhead; Scott Dobson; Gareth Jones; Qingnan Tang; Irina Ivanenko; Oleg Panichev; Timothée Proix; Michal Náhlík; Daniel B Grunberg; Chip Reuben; Gregory Worrell; Brian Litt; David T J Liley; David B Grayden; Mark J Cook
Journal:  Brain       Date:  2018-09-01       Impact factor: 13.501

View more
  5 in total

Review 1.  Dogs as a Natural Animal Model of Epilepsy.

Authors:  Wolfgang Löscher
Journal:  Front Vet Sci       Date:  2022-06-22

2.  Seizure forecasting using minimally invasive, ultra-long-term subcutaneous EEG: Generalizable cross-patient models.

Authors:  Tal Pal Attia; Pedro F Viana; Mona Nasseri; Jonas Duun-Henriksen; Andrea Biondi; Joel S Winston; Isabel P Martins; Ewan S Nurse; Matthias Dümpelmann; Gregory A Worrell; Andreas Schulze-Bonhage; Dean R Freestone; Troels W Kjaer; Benjamin H Brinkmann; Mark P Richardson
Journal:  Epilepsia       Date:  2022-04-20       Impact factor: 6.740

3.  Ambulatory seizure forecasting with a wrist-worn device using long-short term memory deep learning.

Authors:  Mona Nasseri; Tal Pal Attia; Boney Joseph; Nicholas M Gregg; Ewan S Nurse; Pedro F Viana; Gregory Worrell; Matthias Dümpelmann; Mark P Richardson; Dean R Freestone; Benjamin H Brinkmann
Journal:  Sci Rep       Date:  2021-11-09       Impact factor: 4.379

4.  Epilepsy Personal Assistant Device-A Mobile Platform for Brain State, Dense Behavioral and Physiology Tracking and Controlling Adaptive Stimulation.

Authors:  Tal Pal Attia; Daniel Crepeau; Vaclav Kremen; Mona Nasseri; Hari Guragain; Steven W Steele; Vladimir Sladky; Petr Nejedly; Filip Mivalt; Jeffrey A Herron; Matt Stead; Timothy Denison; Gregory A Worrell; Benjamin H Brinkmann
Journal:  Front Neurol       Date:  2021-07-29       Impact factor: 4.003

5.  Semisupervised Seizure Prediction in Scalp EEG Using Consistency Regularization.

Authors:  Deng Liang; Aiping Liu; Le Wu; Chang Li; Ruobing Qian; Rabab K Ward; Xun Chen
Journal:  J Healthc Eng       Date:  2022-01-25       Impact factor: 2.682

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.