Mahmoud A A Ibrahim1, Nayra A M Moussa1, Sherif M A Saad1, Muhammad Naeem Ahmed2, Ahmed M Shawky3, Mahmoud E S Soliman4, Gamal A H Mekhemer1, Al-Shimaa S M Rady1. 1. Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia 61519, Egypt. 2. Department of Chemistry, The University of Azad Jammu and Kashmir, Muzaffarabad 13100, Pakistan. 3. Science and Technology Unit (STU), Umm Al-Qura University, Makkah 21955, Saudi Arabia. 4. Molecular Modelling and Drug Design Research Group, School of Health Sciences, University of KwaZulu-Natal, Westville, Durban 4000, South Africa.
Abstract
σ-Hole and lone-pair (lp)-hole interactions within σ-hole···σ-hole, σ-hole···lp-hole, and lp-hole···lp-hole configurations were comparatively investigated on the pnicogen···pnicogen homodimers (PCl3)2, for the first time, under field-free conditions and the influence of the external electric field (EEF). The electrostatic potential calculations emphasized the impressive versatility of the examined PCl3 monomers to participate in σ-hole and lp-hole pnicogen interactions. Crucially, the sizes of σ-hole and lp-hole were enlarged under the influence of the positively directed EEF and decreased in the case of reverse direction. Interestingly, the energetic quantities unveiled more favorability of the σ-hole···lp-hole configuration of the pnicogen···pnicogen homodimers, with significant negative interaction energies, than σ-hole···σ-hole and lp-hole···lp-hole configurations. Quantum theory of atoms in molecules and noncovalent interaction index analyses were adopted to elucidate the nature and origin of the considered interactions, ensuring their closed shell nature and the occurrence of attractive forces within the studied homodimers. Symmetry-adapted perturbation theory-based energy decomposition analysis alluded to the dispersion force as the main physical component beyond the occurrence of the examined interactions. The obtained findings would be considered as a fundamental underpinning for forthcoming studies pertinent to chemistry, materials science, and crystal engineering.
σ-Hole and lone-pair (lp)-hole interactions within σ-hole···σ-hole, σ-hole···lp-hole, and lp-hole···lp-hole configurations were comparatively investigated on the pnicogen···pnicogen homodimers (PCl3)2, for the first time, under field-free conditions and the influence of the external electric field (EEF). The electrostatic potential calculations emphasized the impressive versatility of the examined PCl3 monomers to participate in σ-hole and lp-hole pnicogen interactions. Crucially, the sizes of σ-hole and lp-hole were enlarged under the influence of the positively directed EEF and decreased in the case of reverse direction. Interestingly, the energetic quantities unveiled more favorability of the σ-hole···lp-hole configuration of the pnicogen···pnicogen homodimers, with significant negative interaction energies, than σ-hole···σ-hole and lp-hole···lp-hole configurations. Quantum theory of atoms in molecules and noncovalent interaction index analyses were adopted to elucidate the nature and origin of the considered interactions, ensuring their closed shell nature and the occurrence of attractive forces within the studied homodimers. Symmetry-adapted perturbation theory-based energy decomposition analysis alluded to the dispersion force as the main physical component beyond the occurrence of the examined interactions. The obtained findings would be considered as a fundamental underpinning for forthcoming studies pertinent to chemistry, materials science, and crystal engineering.
Noncovalent interactions
have recently been the subject of many
studies due to the recognition of their key role in drug discovery,[1−3] crystal engineering,[4,5] and materials science.[6−8] Among noncovalent interactions, hole bonds have recently evoked
an exceptional interest. In a series of studies, the covalently bonded
atoms of group IV–VII were reported with recognizable ability
to form regions of depletion in electron density,[9−12] dubbed as σ-,[13] π-,[14] lone-pair
(lp)-,[15] and radical (R•)-holes.[16] The holes of group IV–VII
element-containing molecules can interact with Lewis bases, forming
tetrel,[17−19] pnicogen,[20−25] chalcogen,[26−31] and halogen[13,31−36] bonds, respectively. Among hole-bonding complexes, the interactions
of pnicogen-containing molecules with Lewis bases have found sustained
attention of a variety of theoretical[37−42] and experimental studies[43−45] by dint of their significant
importance in chemical reactions[46−48] and biological systems.[49]More recently, like···like
noncovalent interactions
have triggered a rich trove of interest because of their genuine roles
in material and crystal design.[50−53] In that spirit, many studies have recently been established
to elucidate the features of like···like noncovalent
interactions, in which the intermolecular interaction occurred between
two similar atoms within the like···like configuration.
The interactions involving the covalently bonded halogen atoms represent
the most well-known type of like···like interactions.[54−60] Parallel to halogen···halogen interactions, the interactions
of chalcogens,[61,62] tetrels,[63−65] and triels[66] within like···like configurations
were thoroughly addressed. However, a great deal of interest has been
directed toward the investigation of pnicogen bonds; there is a paucity
in the literature pertinent to the pnicogen···pnicogen
interactions.One of the most crucial factors that affect noncovalent
interactions
is the external electric field (EEF). As a point of departure, Bandrauk
et al. elucidated the effect of the intense local electric fields
(ranging from ∼108 to ∼1010 V/m)
arising from the surrounding medium of the biological systems.[67,68] Subsequently, a flurry of studies has been devoted to illustrating
the EEF effect on variant noncovalent interactions.[69−72] Upon careful literature review,
the EEF has demonstrated exceptional influence on the strength of
the noncovalently bonded complexes. Nevertheless, there is a paucity
in the literature relevant to its effect on versatile σ-hole
and lp-hole interactions, in particular, within pnicogen-bearing complexes.Accordingly, the current study was devoted to thoroughly elucidate
the features of the σ-hole and lp-hole interactions of pnicogen···pnicogen
homodimers (PCl3)2 within σ-hole···σ-hole,
σ-hole···lp-hole, and lp-hole···lp-hole
configurations, for the first time, under field-free conditions and
the influence of an EEF (Figure ). The employed EEF strengths were set to be 0.002,
0.004, and 0.008 au, which suited in the range of the electric field
within the biological systems (i.e., 0.0002–0.0194 au). Versatile
quantum mechanical calculations, including geometrical optimization,
molecular electrostatic potential (MEP) maps, and surface electrostatic
potential extrema (Vs,max), were carried
out for the investigated PCl3 molecules under field-free
and directed EEF conditions. Besides, the point-of-charge (PoC) approach
was executed as an indicative tool for the electrostatic potentiality
of the studied systems to attractively interact with Lewis bases and
acids within a small scale (using PoC with values of −0.50
and +0.50 au, respectively). For pnicogen···pnicogen
homodimers, the energetic quantities were thoroughly assessed using
MP2 and CCSD/CBS levels of theory. Toward an in-depth insight, the
quantum theory of atoms in molecules (QTAIM) and the noncovalent interaction
(NCI) index were adopted to clarify the nature of the selected interactions
from a topological perspective. The given results are not only substantial
for the central understanding of pnicogen···pnicogen
homodimers as essential molecular linkers but also informative for
near-future technological applications pertinent to EEF.
Figure 1
Representation
of (i) EEF effect on pnicogen σ-hole and lone-pair
(lp)-hole and (ii) pnicogen···pnicogen homodimers within
σ-hole···σ-hole, σ-hole···lp-hole,
and lp-hole···lp-hole configurations. The positive
and negative signs represent the directionality of the employed EEF.
Representation
of (i) EEF effect on pnicogen σ-hole and lone-pair
(lp)-hole and (ii) pnicogen···pnicogen homodimers within
σ-hole···σ-hole, σ-hole···lp-hole,
and lp-hole···lp-hole configurations. The positive
and negative signs represent the directionality of the employed EEF.
Computational Methods
The versatility of the pnicogen-bearing monomers PCl3 to
engage in σ-hole and lp-hole interactions of pnicogen···pnicogen
homodimers within σ-hole···σ-hole, σ-hole···lp-hole,
and lp-hole···lp-hole configurations was comparatively
scrutinized (Figure ). The studied monomers and homodimers were first optimized under
field-free conditions and the influence of EEF by the second-order
Møller–Plesset perturbation theory (MP2) method[73] with the aug-cc-pVTZ basis set.[74−76] In geometry optimization of homodimers, no symmetry restrictions
were considered. The utilized EEF was directed along the z-axis in both positive and negative directions, with values ranging
from 0.002, 0.004, to 0.008 au (Figure ). No vibrational frequency calculations were carried
out for the optimized complexes, which gave rise to the possibility
that the structures were not energetic minima. Upon the optimized
monomers, the MEP maps were generated to visualize the electrophilic
and nucleophilic sites on the surfaces of the chemical systems. Also,
the Vs,max at the σ-hole and lp-hole
over the surface of the optimized PCl3 monomers were assessed
with the help of the Multiwfn 3.7 package[77] using a 0.002 au electron density contour based on earlier recommendations.[54,78]With the help of the PoC approach, an electrostatic model
for pnicogen-based
interactions was investigated, for the first time, under field-free
conditions and the influence of the negatively and positively directed
EEF. In the context of the PoC approach, the negatively and positively
charged points were utilized with a value of ±0.50 au to mimic
the roles of Lewis bases and acids,[16,33,79,80] respectively. Besides,
the P···PoC distance effect was thoroughly studied
in the range of 2.5–6.0 Å with a step size of 0.1 Å.
Molecular stabilization energy (Estabilization) was then computed according to the following equation[15,81]For the optimized homodimers, interaction energies were calculated
under field-free conditions and the influence of the negatively and
positively directed EEF, as the difference in energy between the complex
and the sum of the monomers at the MP2/aug-cc-pVTZ level of theory.
The interaction energies were then benchmarked at the CCSD(T)/CBS
level and calculated as follows[82]whereThe basis set superposition error (BSSE)
was eliminated from the
computed MP2 and CCSD(T) energetic quantities by incorporating the
counterpoise correction (CC) procedure.[83] To elucidate the topological features of the studied interactions,
QTAIM[84] was invoked. Using QTAIM, bond
critical points (BCPs) and bond paths (BPs) were generated. Furthermore,
the electron density (ρb) and Laplacian (∇2ρb) were evaluated. The noncovalent interaction
(NCI) index was also adopted to investigate the origin of the σ-hole
and lp-hole interactions within the investigated pnicogen···pnicogen
homodimers based on the electron density and its derivatives.[85] QTAIM and NCI index analyses were performed
using Multiwfn 3.7 software,[77] and their
plots were graphed with Visual Molecular Dynamics (VMD) software.[86] All the remaining quantum mechanical calculations
were carried out using Gaussian09 software.[87]Furthermore, symmetry-adapted perturbation theory-based energy
decomposition analysis (SAPT-EDA) was executed to elucidate the physical
nature of the studied interactions. In that spirit, the physical energetic
components, involving electrostatic (Eelst), induction (Eind), dispersion (Edisp), and exchange (Eexch), were assessed for the investigated homodimers with the
help of the PSI4 code[88] at the SAPT2 level
of truncation[89] using the aug-cc-PVTZ basis
set. The total SAPT2 energy (ESAPT2) could
be given according to the following equations[90]where
Results and Discussion
MEP Calculations
MEP maps have been
considered as a real descriptor for the charge distribution along
the molecular surfaces of the noncovalent bond donors and acceptors.[91−93] Whereby MEP maps, low and high electron densities are identified
by the colored maps, where blue and red sites are prone to nucleophilic
and electrophilic attacks, respectively. In the current study, MEP
maps were generated under field-free conditions and the effect of
EEF using 0.002 au electron density contour. Further quantitative
evidence was introduced by evaluating Vs,max at the σ-hole and lp-hole over the surface of the optimized
PCl3 monomer (Figure ). The MEP maps along with Vs,max values under the influence of the EEF are illustrated in Figure . The correlation
of the EEF strength and direction with the Vs,max values at the σ-hole and lp-hole of the optimized
PCl3 monomer is displayed in Figure .
Figure 2
MEP maps for PCl3 molecules as σ-hole
and lp-hole
under field-free conditions and the influence of the negatively and
positively directed EEF with values ranging from 0.002 to 0.008 au.
The electrostatic potential varies from −0.01 (red) to +0.01
(blue) au. The surface electrostatic potential extrema (Vs,max) are computed (in kcal/mol) at the σ-hole
and lp-hole of the phosphorous atom.
Figure 3
Correlation
between the EEF strength and the surface electrostatic
potential extrema (Vs,max). The EEF’s
positive and negative charges were adopted to illustrate the positive
and negative directions, respectively.
MEP maps for PCl3 molecules as σ-hole
and lp-hole
under field-free conditions and the influence of the negatively and
positively directed EEF with values ranging from 0.002 to 0.008 au.
The electrostatic potential varies from −0.01 (red) to +0.01
(blue) au. The surface electrostatic potential extrema (Vs,max) are computed (in kcal/mol) at the σ-hole
and lp-hole of the phosphorous atom.Correlation
between the EEF strength and the surface electrostatic
potential extrema (Vs,max). The EEF’s
positive and negative charges were adopted to illustrate the positive
and negative directions, respectively.Looking at Figure , the occurrence of pnicogen σ-hole and lp-hole on the surface
of the investigated PCl3 molecules was obviously noticed.
The prominent size of the blue region was detected in the case of
σ-hole, outlining the further favorability of phosphorous, as
a pnicogen bond donor, to interact via σ-hole rather than lp-hole.
By applying EEF, as illustrated in Figure , the sizes of σ-holes and lp-holes
were increased and decreased by orienting the employed EEF in the
positive and negative directions, respectively. In the same context,
the data shown in Figure consistently revealed the direct and reverse correlation
between the positive value of the Vs,max and the strength of the negatively and positively directed EEF,
respectively.
PoC Calculations
In the PoC approach,
negatively and positively charged points are utilized to mimic the
role of Lewis bases and acids in noncovalent interactions. The nucleophilic
and electrophilic natures of the chemical systems are accordingly
addressed from an electrostatic perspective in terms of molecular
stabilization energy.[33] The PoC approach
has recently been notarized as a trustworthy method for studying the
σ-hole,[94−96] lp-hole,[15] π-hole,[97,98] and R•-hole[99] interactions
from an electrostatic point of view.[15,99,100] With the help of the PoC approach, the ability of
the PCl3 molecule to interact with Lewis bases and acids
was investigated by employing negative and positive PoCs, respectively. ±σ-Hole and ±lp-hole tests were
executed for the optimized PCl3 molecule under the influence
of 0.000, ±0.002, ±0.004, ± 0.006, and ±0.008
au EEF at σ-hole··· and lp-hole···PoC
distance in the range of 2.5–6.0 Å with a step size of
0.1 Å using a PoC value of ±0.50 au. Molecular stabilization
energy curves were generated and are displayed in Figure . Table gathers molecular stabilization energies
of the σ-hole··· and lp-hole···PoC
systems at a distance of 2.5 Å.
Figure 4
Molecular stabilization energy curves
for the PCl3···PoC
systems calculated at σ-hole··· and lp-hole···PoC
distance in the range of 2.5–6.0 Å under the field-free
condition and the influence of the negatively and positively directed
EEF with values ranging from 0.002 to 0.008 au in the presence of
±0.50 au PoC.
Table 1
Molecular
Stabilization Energy (Estabilization)
Values for the PCl3···PoC Systems Calculated
at a σ-Hole···
and lp-Hole···PoC Distance of 2.5 Å under the
Field-Free Condition and the Influence of the Negatively and Positively
Directed EEF with Values Ranging from 0.002 to 0.008 au in the Presence
of ±0.50 au PoC
molecular
stabilization energy (Estabilization, kcal/mol)
PCl3···PoC
EEF (au)
–0.50
+0.50
σ-hole···PoC
–0.008
–5.49
–2.92
–0.004
–8.46
–2.33
–0.002
–9.71
–1.82
0.000
–10.84
–1.19
+0.002
–11.85
–0.46
+0.004
–12.74
0.38
+0.008
–14.15
2.38
lp-hole···PoC
–0.008
–8.69
–14.61
–0.004
–9.41
–11.93
–0.002
–9.73
–10.54
0.000
–10.03
–9.12
+0.002
–10.29
–7.67
+0.004
–10.53
–6.19
+0.008
–10.91
–3.11
Molecular stabilization energy curves
for the PCl3···PoC
systems calculated at σ-hole··· and lp-hole···PoC
distance in the range of 2.5–6.0 Å under the field-free
condition and the influence of the negatively and positively directed
EEF with values ranging from 0.002 to 0.008 au in the presence of
±0.50 au PoC.For –σ-hole and –lp-hole
tests, it was noticed from the data in Figure that the optimized PCl3···PoC
systems exhibited the most significant negative molecular stabilization
energies in the presence of the positively directed EEF, followed
by the absence of EEF, and finally the negatively directed EEF. From Table , as an illustration,
the molecular stabilization energies of the σ-hole···PoC
electrostatic model were found with values of −10.84, −11.85,
and −9.71 kcal/mol under the influence of 0.000, +0.002, and
−0.002 au EEF, respectively.With regard to the effect
of the EEF strength, the molecular stabilization
energy increased with increasing the magnitude of the positively directed
EEF value and decreased by applying the EEF along the reverse direction.
For instance, in the case of σ-hole interactions, the molecular
stabilization energies of the PCl3···PoC
systems exhibited values of −11.85, −12.74, and −14.15
kcal/mol under the influence of +0.002, +0.004, and +0.008 au EEF,
respectively. Conspicuously, the highly appreciated electrostatic
interactions of the PCl3···PoC systems were
observed by the occurrence of the substantial negative molecular stabilization
energies in the case of σ-hole···PoC more than
that of lp-hole···PoC.Turning to the results
of +σ-hole, it can be seen
from the data in Figure that the molecular stabilization energies were progressively faded,
and then the molecular destabilization energies boosted by applying
the EEF along the positive direction. In contrast, the negatively
directed EEF enhanced the strength of the PCl3···PoC
systems.In the presence of the +0.50 au PoC, the lp-hole electrostatic
interactions exhibited the most considerable molecular stabilization
energies, particularly under the influence of the −0.008 au
EEF with a value of −14.61 kcal/mol. Such significant energies
outlined the prominent contributions of the three coplanar atoms in
the strength of lp-hole-based interactions. In all instances, the
strength of the positively directed EEF exhibited direct and reversed
correlations with the molecular stabilization energies of the PCl3···PoC systems in the presence of negative
and positive PoC, respectively. The reversed pattern was detected
for the strength of the negatively directed EEF.
Energetic Study
σ-Hole and
lp-hole interactions of the (PCl3)2 homodimers
were comparatively studied within the σ-hole···σ-hole,
σ-hole···lp-hole, and lp-hole···lp-hole
configurations (see Figure ). Geometrical optimization was first performed at the MP2/aug-cc-pVTZ
level of theory for the investigated homodimers under the field-free
condition and the influence of the negatively and positively directed
EEF. Upon the optimized homodimers, interaction energies were computed
at the same level of theory and are correlated with the EEF strength
and direction in Figure .
Figure 5
Interaction energy of the (PCl3)2 homodimers
within σ-hole···σ-hole, σ-hole···lp-hole,
and lp-hole···lp-hole configurations computed (in kcal/mol)
at the MP2/aug-cc-pVTZ level of theory under the field-free condition
and the influence of the negatively and positively directed EEF with
values ranging from 0.002 to 0.008 au.
Interaction energy of the (PCl3)2 homodimers
within σ-hole···σ-hole, σ-hole···lp-hole,
and lp-hole···lp-hole configurations computed (in kcal/mol)
at the MP2/aug-cc-pVTZ level of theory under the field-free condition
and the influence of the negatively and positively directed EEF with
values ranging from 0.002 to 0.008 au.As shown in Figure , all the considered homodimers demonstrated potent potentiality
to participate in pnicogen σ-hole and lp-hole interactions within
the σ-hole···σ-hole, σ-hole···lp-hole,
and lp-hole···lp-hole configurations. The superior
negative interaction energies were ascribed to the (PCl3)2 homodimers within the σ-hole···lp-hole
configuration, followed by σ-hole···σ-hole
and lp-hole···lp-hole configurations. From Table , it can be seen that
the interaction energies were −3.72, −3.55, and −2.98
kcal/mol for the (PCl3)2 homodimers within σ-hole···lp-hole,
σ-hole···σ-hole, and lp-hole···lp-hole
configurations, respectively, under the influence of +0.002 au EEF.
Table 2
Interaction Energies Calculated (in
kcal/mol) at MP2/aug-cc-pVTZ, MP2/CBS, and CCSD(T)/CBS Levels of Theory
of the (PCl3)2 Optimized Homodimers under the
Field-Free Condition and the Influence of the Negatively and Positively
Directed EEF with Values Ranging from 0.002 to 0.008 au
EMP2/aug-cc-pVTZ (kcal/mol)
configuration
EEF
(au)
distancea (Å)
BSSE-uncorrected
BSSE-corrected
estimated BSSE
EMP2/CBS (kcal/mol)
ECCSD(T)/CBS (kcal/mol)
σ-hole···σ-hole
–0.008
3.08
–6.25
–4.47
0.0028
–5.47
–3.50
–0.004
3.15
–5.41
–3.72
0.0027
–4.58
–2.84
–0.002
3.17
–5.21
–3.55
0.0026
–4.38
–2.71
0.000
3.16
–5.16
–3.49
0.0026
–4.34
–2.66
+0.002
3.16
–5.22
–3.55
0.0027
–4.40
–2.71
+0.004
3.15
–5.39
–3.71
0.0027
–4.57
–2.84
+0.008
3.08
–6.25
–4.50
0.0028
–5.50
–3.52
σ-hole···lp-hole
–0.008
4.59
–3.97
–2.97
0.0016
–3.54
–2.51
–0.004
4.41
–4.18
–3.08
0.0017
–3.69
–2.60
–0.002
4.13
–4.58
–3.32
0.0020
–3.98
–2.78
0.000
4.10
–4.79
–3.49
0.0021
–4.16
–2.92
+0.002
4.08
–5.06
–3.72
0.0021
–4.43
–3.15
+0.004
4.03
–5.40
–4.00
0.0022
–4.78
–3.41
+0.008
4.00
–6.36
–4.89
0.0023
–5.74
–4.26
lp-hole···lp-hole
–0.008
5.23
–4.13
–3.22
0.0015
–3.86
–2.78
–0.004
5.23
–3.93
–3.04
0.0014
–3.66
–2.58
–0.002
5.23
–3.88
–2.99
0.0014
–3.61
–2.54
0.000
5.23
–3.87
–2.98
0.0014
–3.59
–2.52
+0.002
5.23
–3.88
–2.98
0.0014
–3.60
–2.52
+0.004
5.23
–3.93
–3.04
0.0014
–3.65
–2.57
+0.008
5.23
–4.13
–3.22
0.0014
–3.86
–2.78
Distances between
the two interacted
phosphorous atoms of the pnicogen homodimers within the modeled σ-hole···σ-hole,
σ-hole···lp-hole, and lp-hole···lp-hole
configurations.
Distances between
the two interacted
phosphorous atoms of the pnicogen homodimers within the modeled σ-hole···σ-hole,
σ-hole···lp-hole, and lp-hole···lp-hole
configurations.For σ-hole···σ-hole
and lp-hole···lp-hole
configurations, the directionality effect of the employed EEF nearly
vanished, which might be interpreted as a consequence of their symmetrical
nature. The enhancement of the interaction energy of the (PCl3)2 homodimers was detected by increasing the strength
of the employed EEF. For example, the interaction energies showed
values of −3.55, −3.71, and −4.50 kcal/mol for
the optimized (PCl3)2 homodimers within the
σ-hole···σ-hole configuration under the
influence of ±0.002, ±0.004, and ±0.008 au EEF, respectively.On the other hand, for an antisymmetric σ-hole···lp-hole
configuration, it was observed that the interaction energies of the
inspected homodimers increased and decreased by applying EEF along
the positive and negative directions, respectively. The interaction
energies exhibited a direct and an inverse correlation with the strength
of the adopted EEF along positive and negative directions, respectively.
Also, the intermolecular distances within the studied homodimers were
noticed to be inversely and directly correlated with the strength
of the negatively and positively directed EEF. Numerically, the intermolecular
distances of the optimized (PCl3)2 homodimers
within the σ-hole···lp-hole configuration under
the influence of +0.008, +0.004, and +0.002 au EEF were 4.00, 4.03,
and 4.08 Å, respectively.Moreover, the benchmarking of
the interaction energies was carried
out for all the examined homodimers at the MP2/CBS and CCSD/CBS levels
of theory. The computed MP2/CBS and CCSD(T)/CBS interaction energies
are compiled in Table , revealing a near similarity between the interaction energy values
computed at both levels of theory. Besides, the effect of the directed
EEF on the BSSE-CC was evaluated (Table ). According to the data listed in Table , the EEF demonstrated
a negligible effect on the computed BSSE values. Toward further accuracy,
the effect of consideration of BSSE-CC in geometry optimization was
examined for the (PCl3)2 homodimer within the
three studied configurations. The examined homodimers were optimized
with and without BSSE-CC, and the corresponding interaction energies
were computed. According to the results, the difference between the
interaction energies of the BSSE-corrected and BSSE-uncorrected optimized
geometries were −0.08, −0.10, and −0.05 kcal/mol
for σ-hole···σ-hole, σ-hole···lp-hole,
and lp-hole···lp-hole configurations, respectively.
Consequently, the obtained results affirmed that the consideration
of BSSE-CC in the geometry optimization had a negligible effect on
the computed interaction energies.
SAPT-EDA
Calculations
The symmetry-adapted
perturbation theory-based energy decomposition analysis (SAPT-EDA)
has been confirmed as an informative tool for determining the physical
nature of noncovalent interactions.[101,102] In the context
of SAPT-EDA, the total interaction energy is directly decomposed into
its four physical meaningful components, including electrostatic (Eelst), exchange (Eexch), induction (Eind), and dispersion (Edisp) forces (Figure ). For optimized homodimers, SAPT-EDA was
carried out at the SAPT2 level of truncation using the PSI4 code,[88] and the released components are collected in Table .
Figure 6
Bar chart for physical
components of total SAPT2 energy including
electrostatic (Eelst), induction (Eind), dispersion (Edisp), and exchange (Eexch) components for
pnicogen···pnicogen (PCl3)2 homodimers
under the field-free condition and the effect of negatively and positively
directed EEF.
Table 3
Electrostatic (Eelst), Induction (Eind), Dispersion
(Edisp), and Exchange (Eexch) Energies of the Optimized (PCl3)2 Homodimers Calculated in kcal/mol at the SAPT2 Level of Truncation
under the Field-Free Condition and the Influence of the Negatively
and Positively Directed EEF with Values Ranging from 0.002 to 0.008
au
configuration
EEF (au)
Eelst (kcal/mol)
Eind (kcal/mol)
Edisp (kcal/mol)
Eexch (kcal/mol)
ETotal SAPT2 (kcal/mol)
σ-hole···σ-hole
–0.008
–8.04
–4.53
–10.63
19.47
–3.73
–0.004
–6.64
–3.67
–9.68
16.24
–3.75
–0.002
–6.24
–3.44
–9.40
15.32
–3.76
0.000
–6.28
–3.46
–9.42
15.41
–3.75
+0.002
–6.32
–3.48
–9.45
15.50
–3.76
+0.004
–6.54
–3.61
–9.62
16.03
–3.75
+0.008
–8.11
–4.56
–10.61
19.55
–3.73
σ-hole···lp-hole
–0.008
–2.44
–0.44
–6.89
6.36
–3.41
–0.004
–2.67
–0.55
–7.31
6.86
–3.67
–0.002
–3.95
–1.00
–8.00
9.01
–3.93
0.000
–4.27
–1.10
–8.25
9.67
–3.94
+0.002
–4.63
–1.23
–8.51
10.43
–3.94
+0.004
–5.25
–1.44
–9.01
11.77
–3.92
+0.008
–5.98
–1.73
–9.58
13.37
–3.92
lp-hole···lp-hole
–0.008
–2.54
–0.36
–7.42
6.92
–3.40
–0.004
–2.49
–0.35
–7.35
6.79
–3.40
–0.002
–2.49
–0.35
–7.35
6.78
–3.40
0.000
–2.48
–0.35
–7.33
6.75
–3.40
+0.002
–2.53
–0.35
–7.39
6.88
–3.40
+0.004
–2.49
–0.35
–7.34
6.78
–3.40
+0.008
–2.54
–0.36
–7.41
6.91
–3.40
Bar chart for physical
components of total SAPT2 energy including
electrostatic (Eelst), induction (Eind), dispersion (Edisp), and exchange (Eexch) components for
pnicogen···pnicogen (PCl3)2 homodimers
under the field-free condition and the effect of negatively and positively
directed EEF.From the data registered in Table , it can be seen that the studied interactions within
all the inspected (PCl3)2 homodimers were dominated
by the dispersion energy (Edisp), which
were earlier reported in the case of halogen, chalcogen, and tetrel
homodimers.[62,65,100] Besides, obvious contributions for the electrostatic (Eelst) and induction (Eind)
interactions were also recognized in the designed pnicogen σ-hole
and lp-hole interactions. However, exchange energy (Eexch) demonstrated positive values for all homodimers,
outlining unfavorable exchange contributions to the strength of the
explored interactions (Figure ). As an illustration, in the case of σ-hole···σ-hole
homodimer under the field-free condition, the Eelst, Eind, Edisp, and Eexch values were −6.28,
−3.46, −9.42, and 15.41 kcal/mol, respectively (Table ).Consistent
with the energetic findings listed in Table , the utilization of the EEF
generally increased the contributions of the Eelst, Eind, and Edisp components for all the studied homodimers. For instance,
the Edisp values of the homodimers within
the σ-hole···lp-hole interactions were −8.25,
−8.51, −9.01, and −9.58 kcal/mol under the influence
of 0.000, +0.002, +0.004, and +0.008 au EEF strength, respectively.In line with the MP2 results, the most prominent negative total
SAPT2 energy was noticed in the case of σ-hole···lp-hole
configuration, followed by σ-hole···σ-hole
and lp-hole···lp-hole configurations. For instance,
the total SAPT2 energies were −3.94, −3.76, and −3.40
kcal/mol for the (PCl3)2 homodimers within σ-hole···lp-hole,
σ-hole···σ-hole, and lp-hole···lp-hole
configurations, respectively, under the influence of +0.002 au EEF.
QTAIM Analysis
QTAIM has been documented
as an intuitive technique that probes the nature of noncovalent interactions.[103−106] Using QTAIM, the BPs and the (3,–1) BCPs were generated to
provide qualitative clues for the occurrence of σ-hole and lp-hole
interactions (Figure ). Furthermore, the topological features, including electron density
(ρb) and Laplacian (∇2ρb), were calculated and are collected in Table .
Figure 7
QTAIM diagrams for the optimized (PCl3)2 homodimers
under the field-free condition and the influence of the negatively
and positively directed EEF with values ranging from 0.002 to 0.008
au. Red dots represent the location of BCPs and BPs.
Table 4
Electron Density (ρb, au) and Laplacian
(∇2ρb, au)
at BCPs of the Optimized (PCl3)2 Homodimers
under the Field-Free Condition and the Influence of the Negatively
and Positively Directed EEF with Values Ranging from 0.002 to 0.008
au
configuration
EEF
ρb (au)
∇2ρb (au)
σ-hole···σ-hole
–0.008
0.0222
0.0354
–0.004
0.0194
0.0343
–0.002
0.0186
0.0338
0.000
0.0187
0.0339
+0.002
0.0188
0.0339
+0.004
0.0192
0.0342
+0.008
0.0223
0.0354
σ-hole···lp-hole
–0.008
0.0053
0.0177
–0.004
0.0048
0.0163
–0.002
0.0080
0.0247
0.000
0.0087
0.0262
+0.002
0.0095
0.0280
+0.004
0.0071
0.0210
+0.008
0.0078
0.0232
lp-hole···lp-hole
–0.008
0.0046
0.0155
–0.004
0.0046
0.0156
–0.002
0.0045
0.0150
0.000
0.0045
0.0150
+0.002
0.0047
0.0160
+0.004
0.0047
0.0160
+0.008
0.0049
0.0164
QTAIM diagrams for the optimized (PCl3)2 homodimers
under the field-free condition and the influence of the negatively
and positively directed EEF with values ranging from 0.002 to 0.008
au. Red dots represent the location of BCPs and BPs.As displayed in Figure , all the studied homodimers
were observed with variant numbers
of BCPs and BPs that differ based on the configuration of the interacting
species. Conspicuously, one, three, four, and six BCPs and BPs were
noticed for the (PCl3)2 homodimers within the
σ-hole···σ-hole, σ-hole···lp-hole,
and lp-hole···lp-hole configurations, confirming the
prominent contributions of the three coplanar atoms to the strength
of the lp-hole based interactions. From Table , the closed shell nature of the σ-hole
and lp-hole interactions within the considered homodimers was revealed
by the relatively low values of ρb and the positive
values of ∇2ρb.Similar to
energetic results, the ρb and ∇2ρb values were decreased and increased by
employing the negatively and positively directed EEF, respectively.
For example, the ρb values of the optimized (PCl3)2 homodimers within the σ-hole···lp-hole
configuration under −0.002, 0.000, and +0.002 au EEF were 0.0080,
0.0087, and 0.0095 au, respectively.
NCI Analysis
Noncovalent interaction
(NCI) index[85,107] was herein invoked to precisely
illustrate the nature and origin of the examined intermolecular interactions
based on the electron density and its derivatives. Within the context
of the NCI index, 3D NCI plots were generated with a reduced density
gradient (RDG) value of 0.50 au and are displayed for all the studied
homodimers in Figure .
Figure 8
Noncovalent interaction (NCI) plots of the optimized (PCl3)2 homodimers under the field-free condition and the influence
of the negatively and positively directed EEF with values ranging
from 0.002 to 0.008 au. The isosurfaces are graphed with a RDG value
of 0.50 au and colored according to sign(λ2)ρ
with a range from −0.035 (blue) to 0.020 (red) au.
Noncovalent interaction (NCI) plots of the optimized (PCl3)2 homodimers under the field-free condition and the influence
of the negatively and positively directed EEF with values ranging
from 0.002 to 0.008 au. The isosurfaces are graphed with a RDG value
of 0.50 au and colored according to sign(λ2)ρ
with a range from −0.035 (blue) to 0.020 (red) au.As shown in Figure , green regions were observed for all the considered complexes,
ensuring
the occurrence of attractive forces between the two interacting species.
Obviously, the size of the green regions exhibited the same pattern
as the energetic quantities (Table ). For example, the green-coded spheres of the interactions
within the σ-hole···σ-hole and lp-hole···lp-hole
configurations enlarged by increasing the magnitude of EEF in both
positive and negative directions in the order 0.002 < 0.004 <
0.008 au. Also, the largest green-coded spheres were noticed in the
case of (PCl3)2 homodimers within the σ-hole···lp-hole
configuration, followed by σ-hole···σ-hole
and lp-hole···lp-hole configurations that were in great
consistency with the energetic affirmations and QTAIM observations.
Overall, the findings of the QTAIM and NCI analyses remarkably confirmed
the availability of (PCl3)2 homodimers to bond
by σ-hole and lp-hole interactions within σ-hole···σ-hole,
σ-hole···lp-hole, and lp-hole···lp-hole
configurations.
Conclusions
The
potentiality of the σ-hole and lone-pair (lp)-hole pnicogen-containing
molecules to form pnicogen···pnicogen homodimers (PCl3)2 within σ-hole···σ-hole,
σ-hole···lp-hole, and lp-hole···lp-hole
configurations was herein explored, for the first time, under field-free
condition and the influence of the EEF. The following conclusions
can be detected from MEP, Vs,max, PoC,
interaction energy, SAPT-EDA, QTAIM, and NCI-based results: (i) the
studied PCl3 molecule has the ability to form σ-hole
and lp-hole with higher tendency for the anterior one, (ii) the positively
directed EEF enlarged the sizes of the pnicogen σ-hole and lp-hole,
while the negatively directed EEF exhibited reverse amplitude, (iii)
the investigated molecule more preferentially forms the pnicogen···pnicogen
homodimer (PCl3)2 within the σ-hole···lp-hole
configuration compared to the other modeled configurations, (iv) the
strength of the studied homodimers within the σ-hole···lp-hole
configuration boosted by directed EEF along the positive direction
and plunged along the negative one, (v) the symmetrical nature of
σ-hole···σ-hole and lp-hole···lp-hole
configurations conclusively decline the directionality effect of the
applied EEF, and finally (vi) the dispersion energy was announced
as the most prevalent forces dominated the σ-hole and lp-hole
interactions within the studied pnicogen···pnicogen
homodimers. These results would be informative for future research
in the brain area of chemistry and materials science..
Authors: Mahmoud A A Ibrahim; Yasmeen A M Mohamed; Heba S M Abd Elhafez; Mohammed N I Shehata; Mahmoud E S Soliman; Muhammad Naeem Ahmed; H R Abd El-Mageed; Nayra A M Moussa Journal: J Mol Graph Model Date: 2021-11-29 Impact factor: 2.518