Literature DB >> 31017721

Nature of halogen-centered intermolecular interactions in crystal growth and design: Fluorine-centered interactions in dimers in crystalline hexafluoropropylene as a prototype.

Arpita Varadwaj1,2, Helder M Marques3, Pradeep R Varadwaj1,2.   

Abstract

The wide occurrence of halogen-centered noncovalent interactions in crystal growth and design prompted this study, which includes a mini review of recent advances in the field. Particular emphasis is placed on providing compelling theoretical evidence of the formation of these interactions between sites of positive electrostatic potential, as well as between sites of negative electrostatic potential, localized on the electrostatic surfaces of the bound fluorine atoms in a prototypical system, hexafluoropropylene (C3 F6 ), upon its interaction with another same molecule to form (C3 F6 )2 dimers. The existence of σ- and π-hole interactions is shown for the stable dimers. Even so, weakly bound interactions locally responsible in holding the molecular fragments together cannot and should not be overlooked since they are partly responsible for determining the overall geometry of the crystal. The results of combined quantum theory of atoms in molecules, molecular electrostatic surface potential, and reduced density gradient noncovalent interaction analyses showed that these latter interactions do indeed play a role in the stability and growth of crystalline C3 F6 itself and the (C3 F6 )2 dimers. A symmetry adapted perturbation theory energy decomposition analysis leads to the conclusion that a great majority of the (C3 F6 )2 dimers examined are the consequence of dispersion (and electrostatics), with nonnegligible contribution from polarization, which together competes with an exchange repulsion component to determine the equilibrium geometries. In a few structures of the (C3 F6 )2 dimer, the fluorine is found to serve as a six-center five-bond donor/acceptor, as found for carbon in other systems (Malischewski and Seppelt, Angew. Chem. Int. Ed. 2017, 56, 368).
© 2019 Wiley Periodicals, Inc. © 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  DFT and MP2 calculations; MESP and SAPT characterizations; QTAIM; fluorine centered bonding; π-σ interactions; σ-hole centered interactions

Year:  2019        PMID: 31017721     DOI: 10.1002/jcc.25836

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  6 in total

Review 1.  The Pnictogen Bond: The Covalently Bound Arsenic Atom in Molecular Entities in Crystals as a Pnictogen Bond Donor.

Authors:  Arpita Varadwaj; Pradeep R Varadwaj; Helder M Marques; Koichi Yamashita
Journal:  Molecules       Date:  2022-05-25       Impact factor: 4.927

2.  Does Oxygen Feature Chalcogen Bonding?

Authors:  Pradeep R Varadwaj
Journal:  Molecules       Date:  2019-08-30       Impact factor: 4.411

Review 3.  The Phosphorus Bond, or the Phosphorus-Centered Pnictogen Bond: The Covalently Bound Phosphorus Atom in Molecular Entities and Crystals as a Pnictogen Bond Donor.

Authors:  Pradeep R Varadwaj; Arpita Varadwaj; Helder M Marques; Koichi Yamashita
Journal:  Molecules       Date:  2022-02-23       Impact factor: 4.411

4.  σ-Hole and LP-Hole Interactions of Pnicogen···Pnicogen Homodimers under the External Electric Field Effect: A Quantum Mechanical Study.

Authors:  Mahmoud A A Ibrahim; Nayra A M Moussa; Sherif M A Saad; Muhammad Naeem Ahmed; Ahmed M Shawky; Mahmoud E S Soliman; Gamal A H Mekhemer; Al-Shimaa S M Rady
Journal:  ACS Omega       Date:  2022-03-22

5.  On the Potentiality of X-T-X3 Compounds (T = C, Si, and Ge, and X = F, Cl, and Br) as Tetrel- and Halogen-Bond Donors.

Authors:  Mahmoud A A Ibrahim; Nayra A M Moussa; Mahmoud E S Soliman; Mahmoud F Moustafa; Jabir H Al-Fahemi; H R Abd El-Mageed
Journal:  ACS Omega       Date:  2021-07-16

6.  Type I-IV Halogen⋯Halogen Interactions: A Comparative Theoretical Study in Halobenzene⋯Halobenzene Homodimers.

Authors:  Mahmoud A A Ibrahim; Rehab R A Saeed; Mohammed N I Shehata; Muhammad Naeem Ahmed; Ahmed M Shawky; Manal M Khowdiary; Eslam B Elkaeed; Mahmoud E S Soliman; Nayra A M Moussa
Journal:  Int J Mol Sci       Date:  2022-03-14       Impact factor: 5.923

  6 in total

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