Bernhard Baumann1, Conrad W Merkle1, Marco Augustin1, Martin Glösmann2, Gerhard Garhöfer3. 1. Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Währinger Gürtel 18-20, 1090 Vienna, Austria. 2. Core Facility for Research and Technology, University of Veterinary Medicine Vienna, Veterinärplatz 1, 1210 Vienna, Austria. 3. Department of Clinical Pharmacology, Medical University of Vienna, Währinger Gürtel 18-20, 1090 Vienna, Austria.
Abstract
Irregular ocular pulsatility and altered mechanical tissue properties are associated with some of the most sight-threatening eye diseases. Here we present 4D optical coherence tomography (OCT) for the quantitative assessment and depth-resolved mapping of pulsatile dynamics in the murine retina and choroid. Through a pixel-wise analysis of phase changes of the complex OCT signal, we reveal spatiotemporal displacement characteristics across repeated frame acquisitions. We demonstrate in vivo fundus elastography (FUEL) imaging in wildtype mouse retinas and in a mouse model of retinal neovascularization and uncover subtle structural deformations related to ocular pulsation. Our data in mouse eyes hold promise for a powerful retinal elastography technique that may enable a new paradigm of OCT-based measurements and image contrast. Published by Optica Publishing Group under the terms of the Creative Commons Attribution 4.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI.
Irregular ocular pulsatility and altered mechanical tissue properties are associated with some of the most sight-threatening eye diseases. Here we present 4D optical coherence tomography (OCT) for the quantitative assessment and depth-resolved mapping of pulsatile dynamics in the murine retina and choroid. Through a pixel-wise analysis of phase changes of the complex OCT signal, we reveal spatiotemporal displacement characteristics across repeated frame acquisitions. We demonstrate in vivo fundus elastography (FUEL) imaging in wildtype mouse retinas and in a mouse model of retinal neovascularization and uncover subtle structural deformations related to ocular pulsation. Our data in mouse eyes hold promise for a powerful retinal elastography technique that may enable a new paradigm of OCT-based measurements and image contrast. Published by Optica Publishing Group under the terms of the Creative Commons Attribution 4.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI.
The ocular in- and outflow of blood induces volumetric changes to the eye
ball. It thus causes movement of ocular structures and a variation of the
intraocular pressure synchronous with the cardiac cycle [1]. The relation of ocular pulsatility and
biomechanical properties of eye structures such as elasticity and thus
stiffness and rigidity have been investigated in preclinical and clinical
studies [2-10]. Irregularities of ocular pulsatility
have been associated with some of the most frequent and sight-threatening
eye diseases including age-related macular degeneration (AMD) [11] and glaucoma [12,13]. While
clinical studies are limited to the actual physiological and pathological
states of volunteers and patients, preclinical studies in animal models
have enabled the investigation of an extended, controlled range of
scenarios, such as disease evolution and novel treatment avenues, on a
fast-forward time scale spanning only a few months.Measurements of ocular pulsatility have been performed based on pressure
variations and relative tissue motion. Using tonometers to detect
pulsatile changes of the intraocular pressure, first approaches such as
pneumotonometry, modified Goldmann applanation tonometry, and dynamic
contour tonometry were demonstrated [14-18]. These techniques assessed ocular pulsatility globally and
without spatially resolved information or only indirectly via the ocular
pulse amplitude. In contrast, optical techniques based on laser
interferometry enabled pointwise measurements of displacements of one
ocular structure (e.g., the retina) with respect to another reference
tissue (e.g., the cornea) [19-21].
Optical fundus pulsation measurements have been shown to be a useful
contact-free method for the assessment of a variety of physiological
conditions, for studying medication-induced effects and for investigating
diseased eyes. Still, fundus pulsations depend on location within the eye
and most optical approaches only provided information on the pulsatile
character at a single spatial location.Optical coherence tomography (OCT) was introduced three decades ago as a
noninvasive modality for imaging transparent and translucent samples and
tissues [22]. By scanning a light
beam over the tissue and measuring the echo time delay and intensity of
backscattered light using low-coherence interferometry, OCT can perform
micron scale imaging of biological tissues in situ and in real time [23,24]. In ophthalmology, OCT imaging enables the visualization of
retinal structure and pathology with resolutions that are impossible to
obtain with any other noninvasive technique [25]. During the last two decades, OCT has become a
clinical standard for diagnosis and management of ocular diseases.
State-of-the art clinical OCT machines provide acquisition speeds of up to
100,000 depth-scans per second, enabling volume acquisition times of only
a few seconds as well as the development of novel motion-based contrast
mechanisms such as OCT angiography (OCTA) [26].While the contrast of conventional OCT is based on the intensity of the
light backscattered by the sample, functional OCT methods add information
by more thoroughly analyzing the OCT signal, for instance
spectroscopically or in terms of its polarization state. Some very popular
approaches to functional OCT exploit the phase information already
incorporated in the OCT signal. Phase data can be used to detect subtle
relative displacements between successive scans. Such analysis enables the
visualization of retinal perfusion by OCTA and quantitative blood flow
measurements by Doppler OCT [27-29]. Phase-differences between consecutive depth profiles
(A-scans) or tomograms (B-scans) can further be used to determine relative
displacement and sample deformation in optical coherence elastography
(OCE) [30-32]. Traditionally, in
OCE a load is used to cause a deformation of the imaged sample and the
measured pulse propagation is correlated to the impulse function to derive
biomechanical properties such as stiffness or elastic modulus [31,32]. In ophthalmology, OCE was applied in the past to investigate
various ocular structures ex vivo [33-36]. Recently, first
demonstrations of in vivo OCE were reported for measuring pulse-induced
deformations between the cornea and the retina, within the anterior
chamber, as well as within the posterior eye [34,37-43].
Most recently, OCT based elastography was presented as a promising
approach to measure pulsatile movements in the human optic nerve head in
2D [38,39] as well as to map relative pulsations between the
retinal and scleral slab [44]. Here
we present fundus elastography (FUEL) based on 4D-OCT for the quantitative
assessment and depth-resolved mapping of pulsatile dynamics in the murine
retina and choroid with high spatiotemporal resolution.
Methodology
OCT ophthalmoscope for 4D imaging of the posterior mouse
eye
A homemade spectral domain polarization-sensitive OCT system was used
to demonstrate the principle of depth-resolved deformation mapping
with FUEL. Located in the animal facility of the Medical University of
Vienna in close vicinity to the animal housing rooms, the setup was
tailored for in-vivo imaging in the posterior eyes of small rodents. A
detailed description of the instrument can be found elsewhere [45]. In brief, the optical layout was
based on a broadband superluminescent diode (
= 840 nm,
= 100 nm) providing an axial
resolution of 3.8
m in eye tissue, a free-space
Michelson interferometer with polarization optics, and a
polarization-sensitive detection unit incorporating two identical
spectrometers operating at a line rate of 83 kHz. The sample arm
included an x-y galvanometer scanner and two telescopes optimized for
retinal scanning in rodent eyes. BM-scans, i.e. 2,000 B-scan repeats
at one position with a 1-mm lateral range, as well as volumetric scans
spanning a retinal field of view of
1 mm (
)
1 mm (
) sampled by 512 (
)
400 (
, with 5 repeats per position)
1536 (
) voxels were acquired.
Processing pipeline
From the simultaneously recorded spectral interferograms, the complex
OCT signals were computed for both polarization channels by standard
spectral domain OCT processing including fixed pattern noise removal
by background subtraction, linearization of the spectral data in
wavenumber space, numerical dispersion compensation, and Fourier
transformation. The intensity signals of both polarization channels as
well as the phase signals of the co-polarized channel were used for
the subsequent analysis schematically visualized in Fig. 1. In every B-scan, the inner
limiting membrane (ILM) was segmented by detecting the signal surge at
the vitreoretinal interface. In a next step, the retinal pigment
epithelium (RPE) was segmented in the cross-polarized channel using
the anterior edge of the strong signal caused by polarization
scrambling due to melanin pigmentation. Global axial bulk motion was
corrected using the ILM position as a reference for aligning the image
data in a pixelwise fashion. In order to measure motion between
consecutive B-frames, the phase difference between subsequent frames
was calculated as
where
is the inter-frame time (
7.7 ms). To reduce speckle noise and
increase the signal-to-noise ratio (SNR) of phase difference signals,
the phase difference images
were used as the arguments of phasors
weighted by the respective intensity images and smoothed in the
-
plane using a real-valued Gaussian
convolution kernel
with a standard deviation of 7 pixels (
m),
Fig. 1.
Data processing pipeline. Phase difference images
were computed from subsequent
B-scans and smoothed using a Gaussian convolution filter on
complex phasors. The corresponding OCT reflectivity data was
used to segment the inner limiting membrane (ILM) and the
retinal pigment epithelium (RPE). The phase difference data in
a slab around the photoreceptors,
, was then subtracted from the
smoothed phase difference image to reveal subtle displacements
in the retina and choroid.
Data processing pipeline. Phase difference images
were computed from subsequent
B-scans and smoothed using a Gaussian convolution filter on
complex phasors. The corresponding OCT reflectivity data was
used to segment the inner limiting membrane (ILM) and the
retinal pigment epithelium (RPE). The phase difference data in
a slab around the photoreceptors,
, was then subtracted from the
smoothed phase difference image to reveal subtle displacements
in the retina and choroid.The average phase difference signal of a shallow band around the
photoreceptor layer (PR) – i.e., anterior to the segmented RPE layer –
was calculated as
where the dimensions of the averaging
region were
= 5 pixels (
m),
= 5 pixels (
m), and
= 35 pixels (
m). (Note that
is oriented in the posterior-anterior
direction because the zero-delay was positioned just posterior to the
sclera during eye alignment). For each frame, the above phase
difference profile of the photoreceptor layer was used to subtract
residual drifts in the phase difference B-scans caused by axial motion
and also included subtle bulk motion that could not be removed by
simply aligning the frames:Since the posterior retina was used as a reference, subtle motion
relative to the photoreceptor layer caused by deformation in the
anterior retina as well as in the choroid and sclera could be
visualized. The frame rate of
130 frames per second yielded an
unambiguous measurement range of inter-frame displacements in the
m/s range. In order to increase the
visibility of structural features, pixels with low SNR were masked in
gray. Note that the two-step alignment process including the coarse
frame-to-frame alignment (here using the ILM as a reference) and the
fine alignment by subtracting the reference phase difference (here
using the photoreceptors as reference) could be sped up by combining
them in a single step using only one reference layer (e.g. only the
photoreceptor layer).In BM-scan data, the temporal evolution of
was investigated for several
handpicked transverse positions (
,
) in different layers. The pulsatile
frequency content of these temporal profiles was quantified by
computing the fast Fourier transform (FFT) along the temporal axis,
, and charting the resulting spectral
amplitude profiles.To provide a quantitative readout of the pulsatile character which can
be grasped at a glance, the absolute values of the BM-scan phase
difference data of one pulse cycle were averaged as
where
denotes the number of frames
contained in one pulse cycle and was determined from the FFT of
.While for the BM-scan data, the slow axis only encodes time (
= 0), the galvanometer y-scanner was
stepped along the slow axis for volumetric acquisitions. Because the
heart rate of mice (482
10 beats per minute [46]) is much faster than the chosen
volume acquisition rate (
3.9 per minute for 2,000 frames per
volume) but much slower than the frame rate of our system (
7,800 frames per minute), each
volumetric OCT dataset contained 3D structural data modulated by the
pulse with a pulse repetition rate of about 15 B-frames per heart
cycle. Again, the actual number of frames per heart cycle,
, was determined for each volume from
the fundamental spectral amplitude of the FFT of the phase difference
data along the slow (
,
) axis. Then each volumetric dataset
was decomposed into
ex post time-gated sub-volumes such
that each of the
sub-volumes represented
of the pulse cycle. The pulsatile
characteristics were investigated for three slabs, namely (i) the
anterior retina from the segmented ILM position until 30 pixels (
m) posterior to the ILM, (ii) the
outer retina from 40 pixels (
m) to 10 pixels (
m) anterior to the segmented RPE, and
(iii) the choroid from 5 pixels to 30 pixels posterior to the
segmented RPE layer. In each slab, the phase difference data
was axially averaged,
to generate a two-dimensional en-face
map of the displacement characteristics. These maps were generated for
each of the
sub-volumes representing the heart
cycle, smoothed by a rolling median filter over 3 pixels in the
-direction, and mounted as a looped
sequence in a movie. Finally, the signed as well as the absolute
values of the phase difference data displacement maps
of each of the N sub-volumes were
averaged to quantitatively assess the average net shift and the
absolute shift in a slab over the heart cycle.Data processing was performed in MATLAB (R2018b, MathWorks). Volume
renderings were generated in Fiji [47].
Animals
The retinas of adult mice were investigated to prove the principle of
4D-OCT based in-vivo mapping of pulsatile tissue deformation dynamics.
Imaging was performed under isoflurane anesthesia. Anesthesia was
induced in a ventilated chamber for 4 minutes with isoflurane
vaporized in oxygen at 4 % concentration. Thereafter, animals were
placed in a comfortable 5-axis mount for imaging and were administered
2 % isoflurane via a nose cone. A heat pad was used to keep the animal
warm. Tropicamide (5 mg/mL, Agepha Pharma s.r.o., Senec, Slovakia) was
used to dilate the pupil and artificial tear drops (Oculotect, Thea
Pharma GmbH, Vienna, Austria) were frequently applied to keep the
corneas of both eyes moist. Wild type mice with a B6SJL background
(The Jackson Laboratory, Bar Harbor, USA) were investigated, as well
as a very low density lipoprotein receptor (VLDLR) knockout mouse
model (B6;129S7-
/J, The Jackson Laboratory, Bar
Harbor, USA [48]), which
develops neovascular lesions in the retina similar to retinal
angiomatous proliferation in exudative AMD [49]. Animal protocols were approved by the animal
ethics committee of the Medical University of Vienna and the Austrian
Ministry of Education, Science, and Research
(BMBWF/66.009/0272-V/3b/2019).
Results
Tomographic imaging of pulsatile tissue displacements
A sequence of B-scans revealing the pulsatile dynamics in the retina of
a wildtype mouse is shown in Fig. 2. Phase difference images from three consecutive heart cycles
are arrayed in Fig. 2(a) and
illustrate the repetitive characteristic of the deformation dynamics
relative to the photoreceptor layer. In these images, the negative
(blue) and positive (red) halves of the color scale represent relative
motion in posterior and anterior direction, respectively. In the
vicinity of large retinal vessels, pronounced deformation patterns
were observed. While pulsatile deformations were rather localized
around the vessels in the retina and tapered off in their
surroundings, the densely vascularized choroid presented a similarly
strong but spatially uniform displacement characteristic. Figure 2(b) provides a magnified view of
three phase difference images marked by colored frames in Fig. 2(a). These images showcase the
deformation differences during the pulsatile cycle. Moreover, the
oppositely directed orientation of the displacements in retina and
choroid can be observed with respect to the photoreceptor layer, which
acted as the reference position. Due to the flow of blood through
large retinal vessels, shadows of artificially elevated deformation
were observed in the posterior retina and choroid. Note that due to
the smoothing operation on the phase difference images, spatially
confined motion (e.g. in retinal capillaries) was washed out.
Figure 2(c) shows a
reflectivity image alongside an image representing the average
absolute displacement over one pulse cycle for each image pixel. Here,
similar to a power Doppler representation, the spatial differences of
the retinal and choroidal pulsation amplitude patterns become
apparent.
Fig. 2.
Cross-sectional imaging of pulsatile tissue displacements in a
wildtype mouse retina. (a) Sequence of phase difference images
over three heart cycles reveal repeated patterns of pulsatile
motion and deformation in the vicinity of retinal and
choroidal vessels. (b) Magnified view of three phase
difference images at different phases of the cardiac cycle as
indicated by the little colored hearts in panel (a). Note the
strong displacements localized in the surrounding of retinal
vessels and the rather uniformly strong relative shifts in and
beneath the choroid. (c) Reflectivity B-scan image averaged
over one pulse cycle (left). B-scan image mapping the average
displacement, i.e. the average phase shift magnitudes, across
the retina and choroid.
Cross-sectional imaging of pulsatile tissue displacements in a
wildtype mouse retina. (a) Sequence of phase difference images
over three heart cycles reveal repeated patterns of pulsatile
motion and deformation in the vicinity of retinal and
choroidal vessels. (b) Magnified view of three phase
difference images at different phases of the cardiac cycle as
indicated by the little colored hearts in panel (a). Note the
strong displacements localized in the surrounding of retinal
vessels and the rather uniformly strong relative shifts in and
beneath the choroid. (c) Reflectivity B-scan image averaged
over one pulse cycle (left). B-scan image mapping the average
displacement, i.e. the average phase shift magnitudes, across
the retina and choroid.
Quantitative charting of pulsatile motion with high 3D
resolution
The BM-scan phase difference data can be used to analyze the pulsation
characteristics in each transverse image pixel (x,z). Results from a time-frequency analysis of localized
pulsatile displacements in the retina and choroid from the dataset
qualitatively presented in Fig. 2 are shown in Fig. 3.
Figure 3(a) indicates four
representative locations in the retinal nerve fiber layer (RNFL),
inner plexiform layer (IPL), RPE, and choroid that were chosen for
spatiotemporal measurements. The corresponding pulsatile phase
difference profiles across the retina and choroid as well as the
spectral amplitudes of their FFTs are shown in Fig. 3(b) and Fig. 3(c), respectively. Here, similar fundamental frequencies of
9.9 Hz and harmonics related to pulsatility were observed in all four
locations, albeit with different spectral intensity. In addition, some
deterministic low frequency content peaking at 1.95 Hz and up to three
harmonics were visible in the anterior retina (see Fig. 3(d)).
Fig. 3.
Time-frequency analysis of localized pulsatile displacements in
the retina and choroid. (a) Cropped average displacement
B-scan image with colored stars indicating measurement
locations in the retina and choroid. (b) Pulsatile profiles in
the retinal nerve fiber layer (RNFL), inner plexiform layer
(IPL), retinal pigment epithelium (RPE), and choroid. (c)
Spectral amplitudes of the phase difference sequences shown in
panel (b). All layers present similar fundamental frequencies
of
= 9.9 Hz and harmonics (
,
) related to pulsatility. In
the anterior retina, deterministic low frequency content is
also visible (see pink square in the top plot). (d) Zoom-in on
the low frequency range of the spectral amplitudes visualizes
a peak at
= 1.95 Hz as well as its
first three harmonics.
Time-frequency analysis of localized pulsatile displacements in
the retina and choroid. (a) Cropped average displacement
B-scan image with colored stars indicating measurement
locations in the retina and choroid. (b) Pulsatile profiles in
the retinal nerve fiber layer (RNFL), inner plexiform layer
(IPL), retinal pigment epithelium (RPE), and choroid. (c)
Spectral amplitudes of the phase difference sequences shown in
panel (b). All layers present similar fundamental frequencies
of
= 9.9 Hz and harmonics (
,
) related to pulsatility. In
the anterior retina, deterministic low frequency content is
also visible (see pink square in the top plot). (d) Zoom-in on
the low frequency range of the spectral amplitudes visualizes
a peak at
= 1.95 Hz as well as its
first three harmonics.
Time gated en-face maps of fundus pulsatility over the heart cycle
in a control mouse
Figure 4 shows retinal and
choroidal pulsation results from a time-gated analysis of 4D-OCT image
data from a wildtype mouse. The three analyzed slabs are indicated
next to a volume rendering of the reflectivity image data in
Fig. 4(a). The temporal
evolution of the relative phase shift averaged within each of the
three slabs – the ILM, outer retina and choroid – is charted in
Fig. 4(b). In contrast to the
strong average displacement in the choroid, the mean phase shift in
the retina was much weaker, in particular in the outer retina. In
Fig. 4(c), plots of the
magnitude of the pulsatile displacements computed as the average
absolute shift within each slab are shown. A clear pulsatile
characteristic can be observed in all three slabs. Interestingly, the
average pulsation magnitude at the vitreoretinal interface and in the
choroid are quite similar. The time-gated sequence of the displacement
en-face images is displayed in a tabular form in Fig. 4(d). Here, the spatiotemporal variations of
fundus pulsations in the ILM, outer retina and choroid over one heart
cycle can be observed. The propagation of the tissue deformation waves
can be seen in Visualization 1 which provides a
looped visualization of the pulsation maps from the same dataset.
Fig. 4.
Time-gated imaging of retinal and choroidal pulsations in a
wildtype mouse by 4D-OCT. (a) Volume rendering of the
reflectivity image data indicating the investigated slabs in
the ILM, outer retina and choroid. (b) Temporal evolution of
the relative phase shift averaged across each of the three
slabs. (c) Magnitude of the pulsatile displacements computed
as the average absolute shift within each slab. (d)
Spatiotemporal mapping of fundus pulsations in ILM, outer
retina and choroid over one heart cycle.
Visualization 1 provides a
loop of the pulsation maps.
Time-gated imaging of retinal and choroidal pulsations in a
wildtype mouse by 4D-OCT. (a) Volume rendering of the
reflectivity image data indicating the investigated slabs in
the ILM, outer retina and choroid. (b) Temporal evolution of
the relative phase shift averaged across each of the three
slabs. (c) Magnitude of the pulsatile displacements computed
as the average absolute shift within each slab. (d)
Spatiotemporal mapping of fundus pulsations in ILM, outer
retina and choroid over one heart cycle.
Visualization 1 provides a
loop of the pulsation maps.
Time gated en-face maps of fundus pulsatility over the heart cycle
in a VLDLR mouse model
Time-gated displacement images of retinal and choroidal pulsations in a
VLDLR mouse reconstructed for three different en-face slabs are shown
Fig. 5. The reflectivity volume
rendering in Fig. 5(a)
visualizes the locations of the investigated slabs in the ILM, outer
retina and choroid. In contrast to the corresponding control mouse
data, the temporal evolution of the mean relative phase shifts of ILM
and choroid appeared to be of similar amplitude (Fig. 5(b)). However, they were similarly oriented in
opposite directions and of greater amplitude than the pulsation
profile of the outer retina. It is worth noting that the scan
locations – centered at the ONH vs. slightly inferior to the ONH –
were not exactly the same in Figs. 4 and 5. The magnitude
of the pulsatile displacements i.e. the average absolute shift within
each slab, is plotted in Fig. 5(c) and exhibits similar characteristics to those in
Fig. 4(c). In Fig. 5(d), sequences of en-face maps
visualize the effect of fundus pulsations in ILM, outer retina and
choroid. A movie of the looped sequences is shown in
Visualization 2. Since in the
original data set consisting of 2,000 frames the heart cycle covered
17 frames in this mouse eye, each
en-face map consists of 117 frames in the
direction. Notably, in some regions
of the outer retina, stronger pulsatile displacements were observed
for frames 9 through 12. A comparison of the frames at the peak of the
pulsatile displacements is shown in Fig. 6. The patches of increased pulsatility in the
outer retina coincided with hyperscattering regions in the same layer,
which have been associated with neovascular lesions in our earlier
work [50,51].
Fig. 5.
Time-gated imaging of retinal and choroidal pulsations in a
VLDLR mouse by 4D-OCT. (a) Volume rendering of the
reflectivity image data indicating the investigated slabs in
the ILM, outer retina and choroid. (b) Temporal evolution of
the relative phase shift averaged across each of the three
slabs. (c) Magnitude of the pulsatile displacements computed
as the average absolute shift within each slab. (d)
Spatiotemporal mapping of fundus pulsations in ILM, outer
retina and choroid over one heart cycle.
Visualization 2 provides a
loop of the pulsation maps.
Fig. 6.
Reflectivity and pulsatile displacements in en-face maps of a
control mouse (top row) and a VLDLR mouse retina (bottom row).
The phase difference maps represent the displacement patterns
at the peak of the pulsatile cycle. The patches of increased
pulsatility in the outer retina of the VLDLR mouse coincide
with hyperscattering regions in the same layer (red
arrows).
Time-gated imaging of retinal and choroidal pulsations in a
VLDLR mouse by 4D-OCT. (a) Volume rendering of the
reflectivity image data indicating the investigated slabs in
the ILM, outer retina and choroid. (b) Temporal evolution of
the relative phase shift averaged across each of the three
slabs. (c) Magnitude of the pulsatile displacements computed
as the average absolute shift within each slab. (d)
Spatiotemporal mapping of fundus pulsations in ILM, outer
retina and choroid over one heart cycle.
Visualization 2 provides a
loop of the pulsation maps.Reflectivity and pulsatile displacements in en-face maps of a
control mouse (top row) and a VLDLR mouse retina (bottom row).
The phase difference maps represent the displacement patterns
at the peak of the pulsatile cycle. The patches of increased
pulsatility in the outer retina of the VLDLR mouse coincide
with hyperscattering regions in the same layer (red
arrows).
Discussion
The analysis of the phase of OCT signals enables quantitative measurements
of subtle, sub-wavelength scale displacements between acquisitions at
different time points. While OCT phase analysis approaches have been
widely exploited for measuring retinal blood flow using Doppler OCT and
the visualization of retinal microvasculature using OCTA [27-29], phase-based tissue displacement
measurements – often referred to as optical coherence elastography [31] – have only been started to be
explored. Phase-based analysis in BM-scans was first presented to
visualize pulsatile motion of the ONH [38,39], and later used to
investigate thermal expansion of retinal tissue [52,53]. Using
full-field OCT, pulse wave propagation of single vessels was imaged in
small fundus patches by analyzing relative motion of the retinal nerve
fiber layer (RNFL) with respect to the retinal pigment epithelium (RPE)
[54]. More recently, we have
demonstrated the visualization of pulsatile motion between the retinal and
chorioscleral slab in the rat retina in vivo [44]. This work has taken this analysis approach to the
next level by introducing 4D imaging of pulsatile tissue displacements
with high spatiotemporal resolution in the murine retina and sclera.In our approach, the temporal resolution was determined by the B-scan rate
and on the order of 7.7 ms. For the analysis of pulsatile motion in mice
under isoflurane anesthesia presented here, the pulse wave was sampled at
14-17 time points per cycle, which enabled a good coverage of pulsatile
motion. Note that in humans, which have a
5 times lower heart rate, the sampling
density per heart cycle would be much higher for the same B-frame rate.
However this increased sampling density would come at the cost of covering
less heart cycles within the same acquisition time, which is rather long
and therefore might not be feasible for humans. The spatial resolution of
our mouse ophthalmoscope is on the order of a few microns in
,
and
; however due to the Gaussian smoothing
operation on the phase difference data (Eq. (2)), the point spread functions in axial
and transverse direction were broadened by the convolution with the 14-
m Gaussian kernel. While the smoothing
step decreased the spatial resolution to an extent that it obstructed the
analysis of small features such as retinal capillaries and their
surroundings, the qualitative and quantitative assessment of the phase
difference image data greatly improved by filtering. On one hand, the
speckle noise was suppressed by the smoothing operation; on the other
hand, the variance of local phase difference measurements was massively
improved by the averaging within the Gaussian kernel. To further
substantiate this point, we show the same phase difference frame before
and after Gaussian filtering of the complex phasors in Fig. 7(a) and (b), respectively. The same
thresholding mask was applied such that pixels with an SNR < 6 dB in
the reflectivity channel were set to gray. The clearly reduced noise in
the phase difference image is obvious and can further be observed in
Fig. 7(c) where for each image
pixel the phase variance in a 10
10-pixel neighborhood was plotted as a
function of SNR. Note that the phase variance levels depend on SNR [55,56]. Still (and not surprisingly), the phase variance values
observed in real-world retinal imaging data are much worse than phase
variance measurements performed using a mirror with very high SNR as a
sample to estimate phase stability (specifically, 5
at SNR = 32.5 dB for our setup). This
suggests that it is worthwhile to estimate phase variance of the actual
image data in addition to a (high-SNR) specification measurement of a
system’s phase stability.
Fig. 7.
Effect of local averaging on phase difference image data. (a)
Representative frame before averaging. Pixels with SNR < 6 dB
in the corresponding reflectivity frame were masked in gray. (b)
Same frame after smoothing using a Gaussian kernel as described in
Eq. (2). (c) Plot of
phase variance vs. SNR for each image pixel in panels (a) and (b)
are shown in red and blue color, respectively. Linear fits of the
respective (logarithmic) data indicate the improvement of phase
variance as the SNR increases.
Effect of local averaging on phase difference image data. (a)
Representative frame before averaging. Pixels with SNR < 6 dB
in the corresponding reflectivity frame were masked in gray. (b)
Same frame after smoothing using a Gaussian kernel as described in
Eq. (2). (c) Plot of
phase variance vs. SNR for each image pixel in panels (a) and (b)
are shown in red and blue color, respectively. Linear fits of the
respective (logarithmic) data indicate the improvement of phase
variance as the SNR increases.The volume scan pattern used for the 4D-OCT data sets shown in Figs. 4–6 was originally designed for the
acquisition of OCT angiography (OCTA) data. It comprised a grid of 400
-positions and five repeats per y-position. This rigid pattern is not ideal for the
proposed measurement approach as the data acquired during one heart cycle
are spread over
15 frames and thus over several
-positions. As the transverse resolution
achieved in the actual OCT data shown in this manuscript was worse than
theoretically expected, we observed that the speckles were still
overlapping up to 15 frames apart and allowed to use the proposed phase
analysis. Still, both the SNR of the phase difference data and the
visualization of small structures would definitely benefit from the use of
a more sophisticated scan pattern. One potential improvement would be the
use of a stepped scan pattern that is synchronized to the pulse frequency
and only steps to the next
-position when one pulse cycle has
completed. The synchronization could be realized in real-time by using an
external pulse measurement such as plethysmography (e.g. using a tail cuff
sensor for rodents, or an ear clip sensor for human use). An alternative
approach could be real-time processing of the OCT data and performing a
short-time Fourier transform in
-direction to assess the pulsation
waveform and frequency in the actual OCT data and swiftly updating the
galvo waveform. Both approaches would also resolve a potential
desynchronization issue caused by a drift of the heart rate during the
volumetric acquisition. The 4D scan method would definitely become more
robust by implementing one of the aforementioned synchronization
approaches.Blood flow in the retinal vasculature produces multiple scattering trails
casted over structures in the posterior layers and choroid. These trails
are caused by forward multiple scattering [57] and often referred to as OCT projection artifact [58]. Different methods have been devised
to mitigate the artificial flow signal produced in OCTA images of the
posterior retina and choroid [58].
Also the FUEL images presented in Figs. 2–6 reveal similar projection artifacts beneath large retinal
vessels (see for instance the choroid beneath the retinal vessel in the
center of Fig. 2(b) and the imprint
of the retinal vessels onto the choroidal displacement maps in Fig. 6). While it may be possible to
computationally remove the impact of the retinal signals trails on the
choroid to some extent, an easy solution allowing for a clearer
visualization of pulsatile displacements in the posterior layers would be
to simply mask these pixels (i.e. set them to background level) and
discard their data from any quantitative analysis.This work introduced an approach to visualize and quantitatively assess
pulsatile motion in the retina and choroid and, in our opinion,
impressively demonstrated the feasibility and capabilities of 4D-OCT to
map deformations volumetrically, non-invasively, and in vivo. However,
using the common 840-nm band for spectral domain OCT, the penetration
beyond the highly pigmented mouse choroid is very low. The use of
high-speed OCT at 1060 nm or even 1310 nm may enable deeper penetration
into the sclera [59-61],
which could be particularly interesting for studying the relation of
tissue biomechanics and intraocular pressure in the papilla region (in
particular the lamina cribrosa) in vivo and with high resolution. In
addition, the longer imaging range and shallow SNR roll-off of swept
source OCT would enable simultaneous imaging of the cornea and the
posterior eye and thus enable more traditional fundus pulsation
measurements based on the relative motion across the entire eye ball – yet
in a volumetric fashion.One challenge during our experiments was respiratory motion which, at least
for OCT imaging in the small mouse eye, can introduce artifacts during
data acquisition by displacing the beam on the pupil and therefore
offsetting the scanned position in the posterior eye. Figure 3 shows the presence of a low-frequency
component in the order of magnitude of the respiration rate of mice. While
motion artifacts may be avoided or at least reduced by restraining the
animal more tightly or by using sophisticated hardware additions such as
retinal or pupil tracking [62,63], it might also be possible to remove
some of these artifacts in post-processing. For instance, high-pass
Fourier filtering could be used to suppress low-frequency artifacts.We demonstrated imaging in a wildtype mouse and in a mouse model of retinal
neovascularization which had developed lesions at several locations within
the scanned field of view. Of note, the pulsatile characteristics at the
lesion site exhibited a stronger displacement compared to the lesion-free
environment and also to the outer retina of the control mouse (cf.
Figure 6). As this is an
interesting observation that deserves a deeper investigation with
sufficient statistical power, a fruitful next step will be an experiment
in a larger cohort of knockout and control mice. In particular, a
longitudinal study of the pulsatile characteristics at lesions sites and
under various physiologic conditions may be an exciting target. Moreover,
this approach may not only be applied to mouse models of neovascular
retinal degeneration but also to rodent models of other diseases with
potential alterations of tissue biomechanics and/or pulsatility.
Ultimately, our approach could be adopted for imaging in human eyes, e.g.
by implementing proper scan protocols with time-gated acquisitions. Still,
as the method presented in this paper is derived from a standard OCTA scan
protocol with some alternative data processing, it has the potential to be
applied to millions of OCTA datasets harbored at OCT machines at
ophthalmology clinics worldwide – even retrospectively.
Conclusion
In this work, we presented 4D mapping of pulsatile motion in the mouse
retina by analyzing the phase difference between subsequently acquired
B-scans and using the signal of the photoreceptor layer as a reference.
With a frame rate of 130 Hz, displacements in the
m/s range were measured. Sequential
imaging of pulsatile dynamics was performed using a BM-scan protocol and a
volume scan protocol. In vivo imaging in the eyes of a wildtype mouse eye
and a VLDLR knockout mouse revealed pulsatile displacements localized in
the vicinity of retinal vessels as well as in the choroid. In the outer
retina of the VLDLR mouse, increased pulsatility was observed at locations
exhibiting high reflectivity associated with neovascular lesions. Our
results prove the concept of fundus elastography (FUEL) based on
high-speed 4D-OCT imaging is capable of visualizing subtle tissue
deformation dynamics related to ocular pulsation. This approach holds
promise for a powerful retinal elastography technique that may enable a
new paradigm of OCT based measurements and image contrast.
Authors: Anton Hommer; Gabriele Fuchsjäger-Mayrl; Hemma Resch; Clemens Vass; Gerhard Garhofer; Leopold Schmetterer Journal: Invest Ophthalmol Vis Sci Date: 2008-05-16 Impact factor: 4.799
Authors: John R Heckenlively; Norman L Hawes; Martin Friedlander; Steven Nusinowitz; Ronald Hurd; Muriel Davisson; Bo Chang Journal: Retina Date: 2003-08 Impact factor: 4.256
Authors: Michaël J A Girard; William J Dupps; Mani Baskaran; Giuliano Scarcelli; Seok H Yun; Harry A Quigley; Ian A Sigal; Nicholas G Strouthidis Journal: Curr Eye Res Date: 2014-05-15 Impact factor: 2.424