Literature DB >> 35145313

Engineered circular ADAR-recruiting RNAs increase the efficiency and fidelity of RNA editing in vitro and in vivo.

Zongyi Yi1,2, Liang Qu1, Huixian Tang1, Zhiheng Liu1, Ying Liu1, Feng Tian1, Chunhui Wang1, Xiaoxue Zhang1,2, Ziqi Feng1, Ying Yu1, Pengfei Yuan3, Zexuan Yi3, Yanxia Zhao3, Wensheng Wei4.   

Abstract

Current methods for programmed RNA editing using endogenous ADAR enzymes and engineered ADAR-recruiting RNAs (arRNAs) suffer from low efficiency and bystander off-target editing. Here, we describe LEAPER 2.0, an updated version of LEAPER that uses covalently closed circular arRNAs, termed circ-arRNAs. We demonstrate on average ~3.1-fold higher editing efficiency than their linear counterparts when expressed in cells or delivered as in vitro-transcribed circular RNA oligonucleotides. To lower off-target editing we deleted pairings of uridines with off-target adenosines, which almost completely eliminated bystander off-target adenosine editing. Engineered circ-arRNAs enhanced the efficiency and fidelity of editing endogenous CTNNB1 and mutant TP53 transcripts in cell culture. Delivery of circ-arRNAs using adeno-associated virus in a mouse model of Hurler syndrome corrected the pathogenic point mutation and restored α-L-iduronidase catalytic activity, lowering glycosaminoglycan accumulation in the liver. LEAPER 2.0 provides a new design of arRNA that enables more precise, efficient RNA editing with broad applicability for therapy and basic research.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2022        PMID: 35145313     DOI: 10.1038/s41587-021-01180-3

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   68.164


  52 in total

1.  Correction of mutations within the cystic fibrosis transmembrane conductance regulator by site-directed RNA editing.

Authors:  Maria Fernanda Montiel-Gonzalez; Isabel Vallecillo-Viejo; Guillermo A Yudowski; Joshua J C Rosenthal
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-09       Impact factor: 11.205

2.  An unwinding activity that covalently modifies its double-stranded RNA substrate.

Authors:  B L Bass; H Weintraub
Journal:  Cell       Date:  1988-12-23       Impact factor: 41.582

3.  Substrate recognition by ADAR1 and ADAR2.

Authors:  S K Wong; S Sato; D W Lazinski
Journal:  RNA       Date:  2001-06       Impact factor: 4.942

Review 4.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

5.  Site-directed RNA repair of endogenous Mecp2 RNA in neurons.

Authors:  John R Sinnamon; Susan Y Kim; Glen M Corson; Zhen Song; Hiroyuki Nakai; John P Adelman; Gail Mandel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-16       Impact factor: 11.205

6.  Dynamic landscape and regulation of RNA editing in mammals.

Authors:  Meng How Tan; Qin Li; Raghuvaran Shanmugam; Robert Piskol; Jennefer Kohler; Amy N Young; Kaiwen Ivy Liu; Rui Zhang; Gokul Ramaswami; Kentaro Ariyoshi; Ankita Gupte; Liam P Keegan; Cyril X George; Avinash Ramu; Ni Huang; Elizabeth A Pollina; Dena S Leeman; Alessandra Rustighi; Y P Sharon Goh; Ajay Chawla; Giannino Del Sal; Gary Peltz; Anne Brunet; Donald F Conrad; Charles E Samuel; Mary A O'Connell; Carl R Walkley; Kazuko Nishikura; Jin Billy Li
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

7.  An efficient system for selectively altering genetic information within mRNAs.

Authors:  Maria Fernanda Montiel-González; Isabel C Vallecillo-Viejo; Joshua J C Rosenthal
Journal:  Nucleic Acids Res       Date:  2016-08-23       Impact factor: 16.971

8.  Optimal guideRNAs for re-directing deaminase activity of hADAR1 and hADAR2 in trans.

Authors:  Marius F Schneider; Jacqueline Wettengel; Patrick C Hoffmann; Thorsten Stafforst
Journal:  Nucleic Acids Res       Date:  2014-04-17       Impact factor: 16.971

9.  Site-Directed RNA Editing in Vivo Can Be Triggered by the Light-Driven Assembly of an Artificial Riboprotein.

Authors:  Alfred Hanswillemenke; Tahsin Kuzdere; Paul Vogel; Gáspár Jékely; Thorsten Stafforst
Journal:  J Am Chem Soc       Date:  2015-12-10       Impact factor: 15.419

10.  Switching Protein Localization by Site-Directed RNA Editing under Control of Light.

Authors:  Paul Vogel; Alfred Hanswillemenke; Thorsten Stafforst
Journal:  ACS Synth Biol       Date:  2017-06-15       Impact factor: 5.110

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  7 in total

1.  In vivo RNA base editing with circular RNAs.

Authors:  Michael Attwaters
Journal:  Nat Rev Genet       Date:  2022-04       Impact factor: 53.242

2.  Targeted RNA editing in brainstem alleviates respiratory dysfunction in a mouse model of Rett syndrome.

Authors:  John R Sinnamon; Michael E Jacobson; John F Yung; Jenna R Fisk; Sophia Jeng; Shannon K McWeeney; Lindsay K Parmelee; Chi Ngai Chan; Siu-Pok Yee; Gail Mandel
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-08       Impact factor: 12.779

3.  Programmable RNA sensing for cell monitoring and manipulation.

Authors:  Yongjun Qian; Jiayun Li; Shengli Zhao; Elizabeth A Matthews; Michael Adoff; Weixin Zhong; Xu An; Michele Yeo; Christine Park; Xiaolu Yang; Bor-Shuen Wang; Derek G Southwell; Z Josh Huang
Journal:  Nature       Date:  2022-10-05       Impact factor: 69.504

Review 4.  Circular RNA and Its Roles in the Occurrence, Development, Diagnosis of Cancer.

Authors:  Yue Zhang; Xinyi Zhang; Yumeng Xu; Shikun Fang; Ying Ji; Ling Lu; Wenrong Xu; Hui Qian; Zhao Feng Liang
Journal:  Front Oncol       Date:  2022-04-07       Impact factor: 5.738

Review 5.  Cas13d: A New Molecular Scissor for Transcriptome Engineering.

Authors:  Rahul Gupta; Arijit Ghosh; Rudra Chakravarti; Rajveer Singh; Velayutham Ravichandiran; Snehasikta Swarnakar; Dipanjan Ghosh
Journal:  Front Cell Dev Biol       Date:  2022-03-31

Review 6.  ADAR2 enzymes: efficient site-specific RNA editors with gene therapy aspirations.

Authors:  Khadija Hajji; Jiří Sedmík; Anna Cherian; Damiano Amoruso; Liam P Keegan; Mary A O'Connell
Journal:  RNA       Date:  2022-07-21       Impact factor: 5.636

Review 7.  RNA therapeutics: updates and future potential.

Authors:  Caroline Zhang; Biliang Zhang
Journal:  Sci China Life Sci       Date:  2022-09-08       Impact factor: 10.372

  7 in total

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