Literature DB >> 29078406

Site-directed RNA repair of endogenous Mecp2 RNA in neurons.

John R Sinnamon1, Susan Y Kim1, Glen M Corson1, Zhen Song2, Hiroyuki Nakai2, John P Adelman1, Gail Mandel3.   

Abstract

Rett syndrome (RTT) is a debilitating neurological disorder caused by mutations in the gene encoding the transcription factor Methyl CpG Binding Protein 2 (MECP2). A distinct disorder results from MECP2 gene duplication, suggesting that therapeutic approaches must restore close to normal levels of MECP2. Here, we apply the approach of site-directed RNA editing to repair, at the mRNA level, a disease-causing guanosine to adenosine (G > A) mutation in the mouse MeCP2 DNA binding domain. To mediate repair, we exploit the catalytic domain of Adenosine Deaminase Acting on RNA (ADAR2) that deaminates A to inosine (I) residues that are subsequently translated as G. We fuse the ADAR2 domain, tagged with a nuclear localization signal, to an RNA binding peptide from bacteriophage lambda. In cultured neurons from mice that harbor an RTT patient G > A mutation and express engineered ADAR2, along with an appropriate RNA guide to target the enzyme, 72% of Mecp2 mRNA is repaired. Levels of MeCP2 protein are also increased significantly. Importantly, as in wild-type neurons, the repaired MeCP2 protein is enriched in heterochromatic foci, reflecting restoration of normal MeCP2 binding to methylated DNA. This successful use of site-directed RNA editing to repair an endogenous mRNA and restore protein function opens the door to future in vivo applications to treat RTT and other diseases. Published under the PNAS license.

Entities:  

Keywords:  ADAR2; MeCP2; RNA editing; Rett syndrome

Mesh:

Substances:

Year:  2017        PMID: 29078406      PMCID: PMC5676935          DOI: 10.1073/pnas.1715320114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  77 in total

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Authors:  Maria Fernanda Montiel-Gonzalez; Isabel Vallecillo-Viejo; Guillermo A Yudowski; Joshua J C Rosenthal
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-09       Impact factor: 11.205

3.  Binding Analysis of Methyl-CpG Binding Domain of MeCP2 and Rett Syndrome Mutations.

Authors:  Ye Yang; Tugba G Kucukkal; Jing Li; Emil Alexov; Weiguo Cao
Journal:  ACS Chem Biol       Date:  2016-08-08       Impact factor: 5.100

4.  A mouse Mecp2-null mutation causes neurological symptoms that mimic Rett syndrome.

Authors:  J Guy; B Hendrich; M Holmes; J E Martin; A Bird
Journal:  Nat Genet       Date:  2001-03       Impact factor: 38.330

5.  Improving site-directed RNA editing in vitro and in cell culture by chemical modification of the guideRNA.

Authors:  Paul Vogel; Marius F Schneider; Jacqueline Wettengel; Thorsten Stafforst
Journal:  Angew Chem Int Ed Engl       Date:  2014-05-28       Impact factor: 15.336

6.  Cell-type-specific repression by methyl-CpG-binding protein 2 is biased toward long genes.

Authors:  Ken Sugino; Chris M Hempel; Benjamin W Okaty; Hannah A Arnson; Saori Kato; Vardhan S Dani; Sacha B Nelson
Journal:  J Neurosci       Date:  2014-09-17       Impact factor: 6.167

Review 7.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

8.  Systemic delivery of MeCP2 rescues behavioral and cellular deficits in female mouse models of Rett syndrome.

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Journal:  J Neurosci       Date:  2013-08-21       Impact factor: 6.167

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10.  Predicting sites of ADAR editing in double-stranded RNA.

Authors:  Julie M Eggington; Tom Greene; Brenda L Bass
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

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  29 in total

Review 1.  Current strategies for Site-Directed RNA Editing using ADARs.

Authors:  Maria Fernanda Montiel-Gonzalez; Juan Felipe Diaz Quiroz; Joshua J C Rosenthal
Journal:  Methods       Date:  2018-11-29       Impact factor: 3.608

2.  Programmable RNA-Guided RNA Effector Proteins Built from Human Parts.

Authors:  Simone Rauch; Emily He; Michael Srienc; Huiqing Zhou; Zijie Zhang; Bryan C Dickinson
Journal:  Cell       Date:  2019-06-20       Impact factor: 41.582

3.  Programmable C-to-U RNA editing using the human APOBEC3A deaminase.

Authors:  Xinxin Huang; Junjun Lv; Yongqin Li; Shaoshuai Mao; Zhifang Li; Zhengyu Jing; Yidi Sun; Xiaoming Zhang; Shengxi Shen; Xinxin Wang; Minghui Di; Jianyang Ge; Xingxu Huang; Erwei Zuo; Tian Chi
Journal:  EMBO J       Date:  2020-10-15       Impact factor: 11.598

4.  REPAIRx, a specific yet highly efficient programmable A > I RNA base editor.

Authors:  Yajing Liu; Shaoshuai Mao; Shisheng Huang; Yongqin Li; Yuxin Chen; Minghui Di; Xinxin Huang; Junjun Lv; Xinxin Wang; Jianyang Ge; Shengxi Shen; Xiaoming Zhang; Dahai Liu; Xingxu Huang; Tian Chi
Journal:  EMBO J       Date:  2020-10-15       Impact factor: 11.598

Review 5.  Off-Target Editing by CRISPR-Guided DNA Base Editors.

Authors:  SeHee Park; Peter A Beal
Journal:  Biochemistry       Date:  2019-08-26       Impact factor: 3.162

6.  irCLASH reveals RNA substrates recognized by human ADARs.

Authors:  Yulong Song; Wenbing Yang; Qiang Fu; Liang Wu; Xueni Zhao; Yusen Zhang; Rui Zhang
Journal:  Nat Struct Mol Biol       Date:  2020-03-23       Impact factor: 15.369

Review 7.  Rett syndrome: insights into genetic, molecular and circuit mechanisms.

Authors:  Jacque P K Ip; Nikolaos Mellios; Mriganka Sur
Journal:  Nat Rev Neurosci       Date:  2018-06       Impact factor: 34.870

8.  Programmable RNA editing by recruiting endogenous ADAR using engineered RNAs.

Authors:  Liang Qu; Zongyi Yi; Shiyou Zhu; Chunhui Wang; Zhongzheng Cao; Zhuo Zhou; Pengfei Yuan; Ying Yu; Feng Tian; Zhiheng Liu; Ying Bao; Yanxia Zhao; Wensheng Wei
Journal:  Nat Biotechnol       Date:  2019-07-15       Impact factor: 54.908

9.  Rational Design of RNA Editing Guide Strands: Cytidine Analogs at the Orphan Position.

Authors:  Erin E Doherty; Xander E Wilcox; Lenka van Sint Fiet; Cherie Kemmel; Janne J Turunen; Bart Klein; Dean J Tantillo; Andrew J Fisher; Peter A Beal
Journal:  J Am Chem Soc       Date:  2021-05-03       Impact factor: 15.419

Review 10.  To protect and modify double-stranded RNA - the critical roles of ADARs in development, immunity and oncogenesis.

Authors:  Emily A Erdmann; Ananya Mahapatra; Priyanka Mukherjee; Boyoon Yang; Heather A Hundley
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-12-27       Impact factor: 8.250

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