Literature DB >> 24108353

Correction of mutations within the cystic fibrosis transmembrane conductance regulator by site-directed RNA editing.

Maria Fernanda Montiel-Gonzalez1, Isabel Vallecillo-Viejo, Guillermo A Yudowski, Joshua J C Rosenthal.   

Abstract

Adenosine deaminases that act on RNA are a conserved family of enzymes that catalyze a natural process of site-directed mutagenesis. Biochemically, they convert adenosine to inosine, a nucleotide that is read as guanosine during translation; thus when editing occurs in mRNAs, codons can be recoded and the changes can alter protein function. By removing the endogenous targeting domains from human adenosine deaminase that acts on RNA 2 and replacing them with an antisense RNA oligonucleotide, we have engineered a recombinant enzyme that can be directed to edit anywhere along the RNA registry. Here we demonstrate that this enzyme can efficiently and selectively edit a single adenosine. As proof of principle in vitro, we correct a premature termination codon in mRNAs encoding the cystic fibrosis transmembrane conductance regulator anion channel. In Xenopus oocytes, we show that a genetically encoded version of our editase can correct cystic fibrosis transmembrane conductance regulator mRNA, restore full-length protein, and reestablish functional chloride currents across the plasma membrane. Finally, in a human cell line, we show that a genetically encoded version of our editase and guide RNA can correct a nonfunctional version of enhanced green fluorescent protein, which contains a premature termination codon. This technology should spearhead powerful approaches to correcting a wide variety of genetic mutations and fine-tuning protein function through targeted nucleotide deamination.

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Year:  2013        PMID: 24108353      PMCID: PMC3831439          DOI: 10.1073/pnas.1306243110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Purification and assay of ADAR activity.

Authors:  Liam P Keegan; Joshua J Rosenthal; Loretta M Roberson; Mary A O'Connell
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

2.  Analysis of bacteriophage N protein and peptide binding to boxB RNA using polyacrylamide gel coelectrophoresis (PACE).

Authors:  C D Cilley; J R Williamson
Journal:  RNA       Date:  1997-01       Impact factor: 4.942

3.  An unwinding activity that covalently modifies its double-stranded RNA substrate.

Authors:  B L Bass; H Weintraub
Journal:  Cell       Date:  1988-12-23       Impact factor: 41.582

4.  Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities.

Authors:  K A Lehmann; B L Bass
Journal:  Biochemistry       Date:  2000-10-24       Impact factor: 3.162

5.  Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences.

Authors:  A Herb; M Higuchi; R Sprengel; P H Seeburg
Journal:  Proc Natl Acad Sci U S A       Date:  1996-03-05       Impact factor: 11.205

6.  Purification of human double-stranded RNA-specific editase 1 (hRED1) involved in editing of brain glutamate receptor B pre-mRNA.

Authors:  M A O'Connell; A Gerber; W Keller
Journal:  J Biol Chem       Date:  1997-01-03       Impact factor: 5.157

Review 7.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

8.  Designed arginine-rich RNA-binding peptides with picomolar affinity.

Authors:  Ryan J Austin; Tianbing Xia; Jinsong Ren; Terry T Takahashi; Richard W Roberts
Journal:  J Am Chem Soc       Date:  2002-09-18       Impact factor: 15.419

9.  Regulation of Na+/K+ ATPase transport velocity by RNA editing.

Authors:  Claudia Colina; Juan Pablo Palavicini; Deepa Srikumar; Miguel Holmgren; Joshua J C Rosenthal
Journal:  PLoS Biol       Date:  2010-11-23       Impact factor: 8.029

10.  Predicting sites of ADAR editing in double-stranded RNA.

Authors:  Julie M Eggington; Tom Greene; Brenda L Bass
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

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  70 in total

1.  Genome, Epigenome, and Transcriptome Editing via Chemical Modification of Nucleobases in Living Cells.

Authors:  Brodie L Ranzau; Alexis C Komor
Journal:  Biochemistry       Date:  2018-12-12       Impact factor: 3.162

Review 2.  Current strategies for Site-Directed RNA Editing using ADARs.

Authors:  Maria Fernanda Montiel-Gonzalez; Juan Felipe Diaz Quiroz; Joshua J C Rosenthal
Journal:  Methods       Date:  2018-11-29       Impact factor: 3.608

3.  A cytosine deaminase for programmable single-base RNA editing.

Authors:  Omar O Abudayyeh; Jonathan S Gootenberg; Brian Franklin; Jeremy Koob; Max J Kellner; Alim Ladha; Julia Joung; Paul Kirchgatterer; David B T Cox; Feng Zhang
Journal:  Science       Date:  2019-07-11       Impact factor: 47.728

4.  Programmable C-to-U RNA editing using the human APOBEC3A deaminase.

Authors:  Xinxin Huang; Junjun Lv; Yongqin Li; Shaoshuai Mao; Zhifang Li; Zhengyu Jing; Yidi Sun; Xiaoming Zhang; Shengxi Shen; Xinxin Wang; Minghui Di; Jianyang Ge; Xingxu Huang; Erwei Zuo; Tian Chi
Journal:  EMBO J       Date:  2020-10-15       Impact factor: 11.598

5.  REPAIRx, a specific yet highly efficient programmable A > I RNA base editor.

Authors:  Yajing Liu; Shaoshuai Mao; Shisheng Huang; Yongqin Li; Yuxin Chen; Minghui Di; Xinxin Huang; Junjun Lv; Xinxin Wang; Jianyang Ge; Shengxi Shen; Xiaoming Zhang; Dahai Liu; Xingxu Huang; Tian Chi
Journal:  EMBO J       Date:  2020-10-15       Impact factor: 11.598

6.  Treating Cystic Fibrosis with mRNA and CRISPR.

Authors:  Alejandro Da Silva Sanchez; Kalina Paunovska; Ana Cristian; James E Dahlman
Journal:  Hum Gene Ther       Date:  2020-09-08       Impact factor: 5.695

Review 7.  A-to-I RNA editing - immune protector and transcriptome diversifier.

Authors:  Eli Eisenberg; Erez Y Levanon
Journal:  Nat Rev Genet       Date:  2018-08       Impact factor: 53.242

8.  Abundant off-target edits from site-directed RNA editing can be reduced by nuclear localization of the editing enzyme.

Authors:  Isabel C Vallecillo-Viejo; Noa Liscovitch-Brauer; Maria Fernanda Montiel-Gonzalez; Eli Eisenberg; Joshua J C Rosenthal
Journal:  RNA Biol       Date:  2017-11-13       Impact factor: 4.652

9.  Site-Selective RNA Splicing Nanozyme: DNAzyme and RtcB Conjugates on a Gold Nanoparticle.

Authors:  Jessica R Petree; Kevin Yehl; Kornelia Galior; Roxanne Glazier; Brendan Deal; Khalid Salaita
Journal:  ACS Chem Biol       Date:  2017-12-19       Impact factor: 5.100

10.  Site-directed RNA repair of endogenous Mecp2 RNA in neurons.

Authors:  John R Sinnamon; Susan Y Kim; Glen M Corson; Zhen Song; Hiroyuki Nakai; John P Adelman; Gail Mandel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-16       Impact factor: 11.205

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