Literature DB >> 35028904

Hydrogen/Deuterium Exchange Behavior During Denaturing/Refolding Processes Determined in Tetragonal Hen Egg-White Lysozyme Crystals.

Akiko Kita1, Yukio Morimoto2.   

Abstract

The hydrogen/deuterium (H/D) exchange of main-chain amide hydrogens in the protein that denatured and refolded in deuterated solvent is considered to contain the traces of hydrogen bond cleavages or the exposure to solvent of the buried part of the protein during the denaturing and refolding (denaturing/refolding) processes. Here, we report the H/D exchange behaviors in hen egg-white lysozymes denatured under acidic conditions, basic conditions, and thermal conditions and then refolded in deuterated solvents, using crystallographic methods. The results indicate that the space containing the Trp28 side chain was hardly exposed to the solvent in acidic conditions, but exposed under basic or heated conditions. Moreover, the β-bridges between Tyr53 and Ile58 in strands β2 and β3, which are in a highly conserved region, show some tolerance to changes in pD. The results indicate that crystallographic method is one of the powerful tools to analyze the denaturing/refolding processes of proteins.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Crystal structure; Denatured/refolded protein; H/D exchange; Hen egg-white lysozyme; X/N joint refinement

Mesh:

Substances:

Year:  2022        PMID: 35028904     DOI: 10.1007/s12033-022-00447-7

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  24 in total

1.  Electrostatic effects and hydrogen exchange behaviour in proteins. The pH dependence of exchange rates in lysozyme.

Authors:  M Delepierre; C M Dobson; M Karplus; F M Poulsen; D J States; R E Wedin
Journal:  J Mol Biol       Date:  1987-09-05       Impact factor: 5.469

2.  Binding of dimethyl sulfoxide to lysozyme in crystals, studied with neutron diffraction.

Authors:  M S Lehmann; R F Stansfield
Journal:  Biochemistry       Date:  1989-08-22       Impact factor: 3.162

3.  Deuterium exchange in lysozyme at 1.4-A resolution.

Authors:  S A Mason; G A Bentley; G J McIntyre
Journal:  Basic Life Sci       Date:  1984

4.  Exchange of individual hydrogens for a protein in a crystal and in solution.

Authors:  G A Bentley; M Delepierre; C M Dobson; R E Wedin; S A Mason; F M Poulsen
Journal:  J Mol Biol       Date:  1983-10-15       Impact factor: 5.469

5.  Protein dynamics investigated by the neutron diffraction-hydrogen exchange technique.

Authors:  A A Kossiakoff
Journal:  Nature       Date:  1982-04-22       Impact factor: 49.962

6.  An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes.

Authors:  Akiko Kita; Yukio Morimoto
Journal:  Mol Biotechnol       Date:  2016-02       Impact factor: 2.695

7.  Structure of hen egg-white lysozyme. A three-dimensional Fourier synthesis at 2 Angstrom resolution.

Authors:  C C Blake; D F Koenig; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Nature       Date:  1965-05-22       Impact factor: 49.962

8.  A nuclear magnetic resonance study of the hydrogen-exchange behaviour of lysozyme in crystals and solution.

Authors:  T G Pedersen; B W Sigurskjold; K V Andersen; M Kjaer; F M Poulsen; C M Dobson; C Redfield
Journal:  J Mol Biol       Date:  1991-03-20       Impact factor: 5.469

9.  Study of ethanol-lysozyme interactions using neutron diffraction.

Authors:  M S Lehmann; S A Mason; G J McIntyre
Journal:  Biochemistry       Date:  1985-10-08       Impact factor: 3.162

10.  Hydrogen exchange in native and denatured states of hen egg-white lysozyme.

Authors:  S E Radford; M Buck; K D Topping; C M Dobson; P A Evans
Journal:  Proteins       Date:  1992-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.