Literature DB >> 26718545

An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes.

Akiko Kita1, Yukio Morimoto2.   

Abstract

A method of hydrogen/deuterium (H/D) exchange with an unfolding-refolding process has been applied to hen egg-white lysozyme (HWL), and accurate evaluation of its deuteration was carried out by time-of-flight mass spectroscopy. Neutron crystallography requires a suitable crystal with enough deuterium exchanged in the protein to decrease incoherent scattering from hydrogens. It is very expensive to prepare a fully deuterated protein, and therefore a simple H/D exchange technique is desirable for this purpose. Acid or base addition to protein solutions with heating effectively increased the number of deuterium up to more than 20 % of that of all hydrogen atoms, and refolded structures were determined by X-ray structure analysis at 1.8 Å resolution. Refolded HWL had increased deuterium content in its protein core and its native structure, determined at atomic resolution, was fully preserved.

Entities:  

Keywords:  H/D exchange; High-resolution X-ray analysis; Protein unfolding–refolding; TOF mass spectroscopy

Mesh:

Substances:

Year:  2016        PMID: 26718545     DOI: 10.1007/s12033-015-9908-8

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  8 in total

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Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  NMR-profiles of protein solutions.

Authors:  Bill Pedrini; Pedro Serrano; Biswaranjan Mohanty; Michael Geralt; Kurt Wüthrich
Journal:  Biopolymers       Date:  2013-11       Impact factor: 2.505

7.  An antibody binding site on cytochrome c defined by hydrogen exchange and two-dimensional NMR.

Authors:  Y Paterson; S W Englander; H Roder
Journal:  Science       Date:  1990-08-17       Impact factor: 47.728

8.  Enhanced visibility of hydrogen atoms by neutron crystallography on fully deuterated myoglobin.

Authors:  F Shu; V Ramakrishnan; B P Schoenborn
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

  8 in total
  5 in total

1.  Protein crystallization and initial neutron diffraction studies of the photosystem II subunit PsbO.

Authors:  Martin Bommer; Leighton Coates; Holger Dau; Athina Zouni; Holger Dobbek
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-08-31       Impact factor: 1.056

2.  Hydrogen/deuterium exchange behavior in tetragonal hen egg-white lysozyme crystals affected by solution state.

Authors:  Akiko Kita; Yukio Morimoto
Journal:  J Appl Crystallogr       Date:  2020-05-29       Impact factor: 3.304

3.  Hydrogen/Deuterium Exchange Behavior During Denaturing/Refolding Processes Determined in Tetragonal Hen Egg-White Lysozyme Crystals.

Authors:  Akiko Kita; Yukio Morimoto
Journal:  Mol Biotechnol       Date:  2022-01-13       Impact factor: 2.695

4.  Structural insights into protein folding, stability and activity using in vivo perdeuteration of hen egg-white lysozyme.

Authors:  Joao Ramos; Valerie Laux; Michael Haertlein; Elisabetta Boeri Erba; Katherine E McAuley; V Trevor Forsyth; Estelle Mossou; Sine Larsen; Annette E Langkilde
Journal:  IUCrJ       Date:  2021-03-06       Impact factor: 4.769

5.  The impact of folding modes and deuteration on the atomic resolution structure of hen egg-white lysozyme.

Authors:  Joao Ramos; Valerie Laux; Michael Haertlein; V Trevor Forsyth; Estelle Mossou; Sine Larsen; Annette E Langkilde
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-11-17       Impact factor: 7.652

  5 in total

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